Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS17710 Genome accession   NZ_CP033635
Coordinates   3001590..3002066 (+) Length   158 a.a.
NCBI ID   WP_012311619.1    Uniprot ID   -
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2996590..3007066
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS17675 (CQP61_17655) - 2996755..2997660 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  CQP61_RS17680 (CQP61_17660) - 2997657..2998727 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  CQP61_RS17685 (CQP61_17665) - 2998863..2999546 (+) 684 WP_000775500.1 hypothetical protein -
  CQP61_RS17690 (CQP61_17670) - 2999562..2999972 (+) 411 WP_000846713.1 hypothetical protein -
  CQP61_RS17700 (CQP61_17680) - 3000193..3001013 (+) 821 Protein_2942 DUF932 domain-containing protein -
  CQP61_RS17705 (CQP61_17685) - 3001095..3001574 (+) 480 WP_000860090.1 antirestriction protein -
  CQP61_RS17710 (CQP61_17690) radC 3001590..3002066 (+) 477 WP_012311619.1 RadC family protein Machinery gene
  CQP61_RS17715 (CQP61_17695) yeeT 3002129..3002350 (+) 222 WP_000692359.1 DUF987 domain-containing protein -
  CQP61_RS17720 (CQP61_17700) cbeA 3002424..3002792 (+) 369 WP_001285585.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  CQP61_RS17725 (CQP61_17705) cbtA 3002881..3003254 (+) 374 Protein_2947 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CQP61_RS17730 (CQP61_17710) yeeW 3003251..3003445 (+) 195 WP_000988600.1 DUF5983 family protein -
  CQP61_RS17735 (CQP61_17715) - 3003491..3003571 (+) 81 Protein_2949 hypothetical protein -
  CQP61_RS32530 (CQP61_17720) - 3003860..3003967 (-) 108 WP_074147515.1 transposase domain-containing protein -
  CQP61_RS32710 - 3003919..3004242 (+) 324 WP_269447326.1 EutP/PduV family microcompartment system protein -
  CQP61_RS17750 (CQP61_17730) tmaR 3004343..3004672 (-) 330 WP_000450409.1 DUF496 family protein -
  CQP61_RS17755 (CQP61_17735) yeeA 3004844..3005902 (-) 1059 WP_001200888.1 FUSC family protein -
  CQP61_RS17760 (CQP61_17740) sbmC 3006100..3006573 (-) 474 WP_001105376.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17646.31 Da        Isoelectric Point: 6.9180

>NTDB_id=284039 CQP61_RS17710 WP_012311619.1 3001590..3002066(+) (radC) [Escherichia coli isolate ECCNB12-2]
MQQLSFLPGEMTPGERSLILRALKTLDRHLHEPGVPFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADCLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=284039 CQP61_RS17710 WP_012311619.1 3001590..3002066(+) (radC) [Escherichia coli isolate ECCNB12-2]
ATGCAACAACTTTCCTTTCTGCCAGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCTGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGCCCTTCACCTCCACCCGTGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACTGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392