Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS15775 Genome accession   NZ_CP033635
Coordinates   2649861..2650337 (+) Length   158 a.a.
NCBI ID   WP_001354455.1    Uniprot ID   -
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2644861..2655337
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS15745 (CQP61_15730) - 2645471..2646421 (-) 951 WP_000157733.1 hypothetical protein -
  CQP61_RS15750 (CQP61_15735) - 2646527..2647411 (+) 885 WP_001696588.1 GTPase -
  CQP61_RS15755 (CQP61_15740) - 2647530..2648207 (+) 678 WP_001097365.1 hypothetical protein -
  CQP61_RS15760 (CQP61_15745) - 2648213..2648365 (+) 153 WP_001696589.1 DUF905 family protein -
  CQP61_RS15765 (CQP61_15750) - 2648466..2649284 (+) 819 WP_001234688.1 DUF932 domain-containing protein -
  CQP61_RS15770 (CQP61_15755) - 2649366..2649845 (+) 480 WP_000860074.1 antirestriction protein -
  CQP61_RS15775 (CQP61_15760) radC 2649861..2650337 (+) 477 WP_001354455.1 RadC family protein Machinery gene
  CQP61_RS15780 (CQP61_15765) - 2650400..2650621 (+) 222 WP_000692303.1 DUF987 domain-containing protein -
  CQP61_RS15785 (CQP61_15770) - 2650640..2651284 (+) 645 WP_045146861.1 hypothetical protein -
  CQP61_RS15790 (CQP61_15775) - 2651334..2651702 (+) 369 WP_001354195.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CQP61_RS15795 (CQP61_15780) - 2651792..2652166 (+) 375 WP_000854697.1 TA system toxin CbtA family protein -
  CQP61_RS15800 (CQP61_15785) - 2652163..2652315 (+) 153 Protein_2582 DUF5983 family protein -
  CQP61_RS15805 (CQP61_15790) - 2652391..2652588 (+) 198 WP_085975623.1 DUF957 domain-containing protein -
  CQP61_RS15810 (CQP61_15795) - 2652673..2653469 (+) 797 Protein_2584 DUF4942 domain-containing protein -
  CQP61_RS15815 (CQP61_15800) ynjB 2653689..2654855 (+) 1167 WP_001215370.1 ABC transporter substrate-binding protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17715.32 Da        Isoelectric Point: 7.2519

>NTDB_id=284033 CQP61_RS15775 WP_001354455.1 2649861..2650337(+) (radC) [Escherichia coli isolate ECCNB12-2]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=284033 CQP61_RS15775 WP_001354455.1 2649861..2650337(+) (radC) [Escherichia coli isolate ECCNB12-2]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392