Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   PGN_RS05020 Genome accession   NC_010729
Coordinates   1164289..1164981 (+) Length   230 a.a.
NCBI ID   WP_004584127.1    Uniprot ID   B2RJM0
Organism   Porphyromonas gingivalis ATCC 33277     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1159289..1169981
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN_RS05010 (PGN_1045) - 1159873..1163079 (-) 3207 WP_012457982.1 glycoside hydrolase family 2 TIM barrel-domain containing protein -
  PGN_RS05020 (PGN_1046) radC 1164289..1164981 (+) 693 WP_004584127.1 RadC family protein Machinery gene
  PGN_RS05025 (PGN_1047) hcp 1165206..1166858 (+) 1653 WP_012457983.1 hydroxylamine reductase -
  PGN_RS11490 - 1167292..1167441 (+) 150 WP_013815682.1 hypothetical protein -
  PGN_RS12105 - 1167460..1167588 (-) 129 WP_262497866.1 hypothetical protein -
  PGN_RS05030 (PGN_1049) - 1168010..1169701 (-) 1692 WP_012457985.1 alkaline phosphatase -

Sequence

Protein


Download         Length: 230 a.a.        Molecular weight: 25549.54 Da        Isoelectric Point: 7.0538

>NTDB_id=28403 PGN_RS05020 WP_004584127.1 1164289..1164981(+) (radC) [Porphyromonas gingivalis ATCC 33277]
MEKMTIKQLHESDRPREKMIRLGARCLTDAELLAILIGSGNDRQTAIQLAQEILAKMDNSLPRLAKCDIQELTGSFRGMG
PAKAVTVMAAMELSRRIPSQEMPRRESITDSRMAYRTISPFLTDLPQEEMWVLLLNQSGKIISMENLSRGGVSETSADVR
LIMHKAVSHLASAIILAHNHPSGTVRPSEQDIQLTQRVQKAATLLGFRLNDHLIIGDDGVYFSFADEGLL

Nucleotide


Download         Length: 693 bp        

>NTDB_id=28403 PGN_RS05020 WP_004584127.1 1164289..1164981(+) (radC) [Porphyromonas gingivalis ATCC 33277]
ATGGAGAAAATGACTATCAAGCAGCTGCACGAATCCGATCGCCCCCGTGAGAAAATGATCCGACTCGGTGCTCGCTGCCT
GACCGATGCCGAACTGCTGGCCATCCTCATCGGATCGGGTAATGACCGGCAAACAGCCATCCAACTGGCTCAAGAGATTC
TGGCCAAGATGGATAACAGCCTGCCGCGTCTGGCCAAATGCGACATACAAGAGCTGACCGGTAGCTTCCGAGGTATGGGA
CCGGCAAAAGCAGTCACCGTGATGGCAGCAATGGAACTGTCCCGCCGTATCCCTTCGCAAGAGATGCCCCGCAGAGAATC
CATTACCGATAGTCGAATGGCCTATCGAACTATAAGCCCATTTCTCACAGACCTGCCGCAGGAAGAAATGTGGGTGTTAC
TCCTCAACCAAAGCGGAAAGATAATCAGCATGGAGAACCTTAGCCGAGGAGGTGTATCGGAGACTTCGGCCGATGTCCGT
CTGATCATGCACAAAGCCGTCTCTCATCTTGCCTCGGCAATCATTCTGGCACACAATCATCCTTCAGGAACGGTACGCCC
AAGTGAACAGGATATTCAGCTTACTCAAAGGGTGCAAAAGGCTGCCACATTGCTCGGATTTCGACTGAACGACCATCTGA
TCATCGGTGACGATGGGGTATATTTCAGTTTCGCTGACGAAGGCCTTCTCTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(109-229)

UPF0758 N-terminal (UPF0758_N)

(6-85)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B2RJM0

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Streptococcus gordonii str. Challis substr. CH1

39.171

94.348

0.37

Multiple sequence alignment