Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   CQP61_RS07330 Genome accession   NZ_CP033635
Coordinates   957409..957924 (+) Length   171 a.a.
NCBI ID   WP_001130208.1    Uniprot ID   Q8FEP8
Organism   Escherichia coli isolate ECCNB12-2     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 952409..962924
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS07285 (CQP61_07285) csrA 953266..953451 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  CQP61_RS07315 (CQP61_07315) yqaB 954639..955205 (+) 567 WP_000273309.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  CQP61_RS07320 (CQP61_07320) yqaA 955202..955630 (+) 429 WP_001287454.1 YqaA family protein -
  CQP61_RS07325 (CQP61_07325) gshA 955703..957259 (+) 1557 WP_000611781.1 glutamate--cysteine ligase -
  CQP61_RS07330 (CQP61_07330) luxS 957409..957924 (+) 516 WP_001130208.1 S-ribosylhomocysteine lyase Regulator
  CQP61_RS07335 (CQP61_07335) emrB 957988..959526 (-) 1539 WP_001296316.1 multidrug efflux MFS transporter permease subunit EmrB -
  CQP61_RS07340 (CQP61_07340) emrA 959543..960715 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  CQP61_RS07345 (CQP61_07345) emrR 960842..961372 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  CQP61_RS07350 (CQP61_07350) ygaH 961463..961798 (-) 336 WP_000119745.1 L-valine transporter subunit YgaH -
  CQP61_RS07355 (CQP61_07355) ygaZ 961788..962525 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19443.21 Da        Isoelectric Point: 5.0362

>NTDB_id=284014 CQP61_RS07330 WP_001130208.1 957409..957924(+) (luxS) [Escherichia coli isolate ECCNB12-2]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARNILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=284014 CQP61_RS07330 WP_001130208.1 957409..957924(+) (luxS) [Escherichia coli isolate ECCNB12-2]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGCGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTCGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAACATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q8FEP8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.684

100

0.737