Detailed information NTG0284011

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: CQP61_RS07055
• Genome accession: NZ_CP033635
• Coordinates: 906887..907879 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli isolate ECCNB12-2
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 901887..912879

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
CQP61_RS07025 (CQP61_07030)	ispD	901948..902658 (+)	711	WP_000246153.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
CQP61_RS07030 (CQP61_07035)	ispF	902658..903137 (+)	480	WP_001219237.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
CQP61_RS07035 (CQP61_07040)	truD	903134..904183 (+)	1050	WP_000568936.1	tRNA pseudouridine(13) synthase TruD	-
CQP61_RS07040 (CQP61_07045)	surE	904164..904925 (+)	762	WP_001295182.1	5'/3'-nucleotidase SurE	-
CQP61_RS07045 (CQP61_07050)	pcm	904919..905545 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
CQP61_RS07050 (CQP61_07055)	nlpD	905730..906824 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
CQP61_RS07055 (CQP61_07060)	rpoS	906887..907879 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
CQP61_RS07060 (CQP61_07065)	-	907999..908406 (-)	408	WP_001208071.1	MarR family transcriptional regulator	-
CQP61_RS07065 (CQP61_07070)	-	908553..909146 (+)	594	WP_000767728.1	non-oxidative hydroxyarylic acid decarboxylases subunit B	-
CQP61_RS07070 (CQP61_07075)	-	909146..910573 (+)	1428	WP_000863217.1	non-oxidative hydroxyarylic acid decarboxylases subunit C	-
CQP61_RS07075 (CQP61_07080)	-	910584..910820 (+)	237	WP_000562981.1	non-oxidative hydroxyarylic acid decarboxylases subunit D	-
CQP61_RS07080 (CQP61_07085)	pphB	910862..911518 (-)	657	WP_001141352.1	protein-serine/threonine phosphatase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=284011 CQP61_RS07055 WP_000081550.1 906887..907879(+) (rpoS) [Escherichia coli isolate ECCNB12-2]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=284011 CQP61_RS07055 WP_000081550.1 906887..907879(+) (rpoS) [Escherichia coli isolate ECCNB12-2]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGCTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTTGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTGATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATCGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGCGAGTTGTCCCA
TAAACTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGCGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAATAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715