Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   CQP61_RS04440 Genome accession   NZ_CP033635
Coordinates   380825..381301 (+) Length   158 a.a.
NCBI ID   WP_072645454.1    Uniprot ID   -
Organism   Escherichia coli isolate ECCNB12-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 375825..386301
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  CQP61_RS04420 (CQP61_04425) - 376243..379089 (+) 2847 WP_072651374.1 Ag43/Cah family autotransporter adhesin -
  CQP61_RS04430 (CQP61_04435) - 379416..380234 (+) 819 WP_001234702.1 DUF932 domain-containing protein -
  CQP61_RS04435 (CQP61_04440) - 380325..380810 (+) 486 WP_000214317.1 antirestriction protein -
  CQP61_RS04440 (CQP61_04445) radC 380825..381301 (+) 477 WP_072645454.1 RadC family protein Machinery gene
  CQP61_RS04445 (CQP61_04450) - 381370..381591 (+) 222 WP_000692312.1 DUF987 domain-containing protein -
  CQP61_RS04450 (CQP61_04455) - 381671..382039 (+) 369 WP_071587515.1 type IV toxin-antitoxin system YeeU family antitoxin -
  CQP61_RS04455 (CQP61_04460) cbtA 382129..382512 (+) 384 WP_000854822.1 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  CQP61_RS04460 (CQP61_04465) - 382503..382991 (+) 489 WP_001177592.1 DUF5983 family protein -
  CQP61_RS04465 (CQP61_04470) - 383003..383200 (+) 198 WP_000839263.1 DUF957 domain-containing protein -
  CQP61_RS04470 (CQP61_04475) - 383297..384142 (+) 846 WP_001280435.1 DUF4942 domain-containing protein -
  CQP61_RS04480 (CQP61_04485) mug 384441..384947 (+) 507 WP_000228936.1 G/U mismatch-specific DNA glycosylase -
  CQP61_RS04485 (CQP61_04490) - 385004..385567 (-) 564 WP_001183949.1 NADAR family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17844.43 Da        Isoelectric Point: 6.9861

>NTDB_id=284001 CQP61_RS04440 WP_072645454.1 380825..381301(+) (radC) [Escherichia coli isolate ECCNB12-2]
MQQLSFLPGEMTTRERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIADETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=284001 CQP61_RS04440 WP_072645454.1 380825..381301(+) (radC) [Escherichia coli isolate ECCNB12-2]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAGTGGCTGATTCTGAACATGGCGGGAC
TGGAGCGGGAAGAGTTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGATGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGCCCTGG
TGGATATCCGGGTACCGGACCATCTGATAGTTGGTGGCAACCAGGTTTTCTCCTTTGCGGAACACGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

58.654

65.823

0.386