Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   AMET_RS22535 Genome accession   NC_009633
Coordinates   4610029..4611396 (-) Length   455 a.a.
NCBI ID   WP_012065474.1    Uniprot ID   A6TWL5
Organism   Alkaliphilus metalliredigens QYMF     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4605029..4616396
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AMET_RS22510 (Amet_4506) ispD 4605492..4606217 (-) 726 WP_012065469.1 2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase -
  AMET_RS22515 (Amet_4507) - 4606339..4607442 (-) 1104 WP_012065470.1 PIN/TRAM domain-containing protein -
  AMET_RS22520 (Amet_4508) - 4607565..4608047 (-) 483 WP_330368637.1 CarD family transcriptional regulator -
  AMET_RS22525 (Amet_4509) - 4608333..4608728 (+) 396 WP_012065472.1 hypothetical protein -
  AMET_RS22530 (Amet_4510) disA 4608787..4609863 (-) 1077 WP_012065473.1 DNA integrity scanning diadenylate cyclase DisA -
  AMET_RS22535 (Amet_4511) radA 4610029..4611396 (-) 1368 WP_012065474.1 DNA repair protein RadA Machinery gene
  AMET_RS22540 (Amet_4512) - 4611745..4614183 (-) 2439 WP_012065475.1 ATP-dependent Clp protease ATP-binding subunit -
  AMET_RS22545 (Amet_4513) - 4614196..4615221 (-) 1026 WP_012065476.1 protein arginine kinase -
  AMET_RS22550 (Amet_4514) - 4615233..4615742 (-) 510 WP_012065477.1 UvrB/UvrC motif-containing protein -

Sequence

Protein


Download         Length: 455 a.a.        Molecular weight: 49621.64 Da        Isoelectric Point: 7.0198

>NTDB_id=28400 AMET_RS22535 WP_012065474.1 4610029..4611396(-) (radA) [Alkaliphilus metalliredigens QYMF]
MAKIKSKFLCQSCGYETPKWLGRCPGCEQWNTMEEEIIQSKKEFNRSPVMVSRTKPQSIQMVQSGAHNRFDTGIKELNRV
LGGGLVKGALTLISGEPGIGKSTLILQASSAVAEKHGRVLYVSGEESEEQIKMRAERLNALAKDLYVVSETNVDVIEKYI
EEYQPVFVIIDSIQTLFKEDLSSAPGSVSQVKECANNLMRIGKSQNIPMFIVAHVTKQGELAGPRVLEHMVDTVLHFEGE
RTQEFRILRALKNRFGTTSEIGVFEMKEEGLIQVENPSAIFLESLTPQAEGAIVVAIVEGTRPLLVEIQALVTPANAGFP
RRTAVGIDLNRLNLIIAVLEKKVGLPLMNQDIYVSVVGGLKLEGTSADLGIAMAIYSSMRGVAISSRDLIALGEVSLTGE
IRAIGHLEKMVKEAEKLGFACGVIPGRSSAKIKGNTSMRIEGVSTLKEALNLIMP

Nucleotide


Download         Length: 1368 bp        

>NTDB_id=28400 AMET_RS22535 WP_012065474.1 4610029..4611396(-) (radA) [Alkaliphilus metalliredigens QYMF]
GTGGCTAAAATTAAAAGCAAGTTTTTATGTCAGTCCTGTGGATATGAGACACCTAAATGGTTGGGACGATGTCCAGGGTG
CGAACAATGGAACACAATGGAAGAAGAAATAATCCAATCTAAAAAAGAATTCAACCGTTCTCCTGTCATGGTGAGTCGGA
CAAAACCACAATCAATCCAAATGGTCCAATCAGGAGCCCATAATAGATTTGATACAGGGATTAAGGAATTAAATCGGGTG
CTAGGGGGTGGTTTGGTCAAAGGAGCCCTGACATTGATTTCTGGAGAACCAGGAATTGGAAAGTCCACCCTGATTTTACA
GGCAAGTAGTGCTGTGGCTGAAAAGCATGGTAGGGTGTTATATGTCTCGGGAGAAGAATCAGAAGAGCAGATTAAAATGA
GGGCGGAGCGCCTTAATGCCTTAGCGAAAGACTTATATGTTGTATCTGAAACAAATGTAGATGTCATCGAAAAATACATT
GAAGAGTACCAACCTGTATTTGTGATTATCGACTCAATTCAAACTCTATTCAAAGAAGACCTTTCTTCTGCACCGGGTAG
TGTTTCACAGGTTAAAGAATGTGCTAACAATCTAATGCGAATTGGAAAATCTCAAAATATACCGATGTTTATTGTGGCCC
ATGTGACGAAACAAGGGGAGCTAGCAGGACCTAGGGTGTTGGAACATATGGTGGACACTGTTTTACATTTTGAAGGAGAA
CGCACACAGGAATTTCGTATATTAAGGGCATTGAAGAATCGTTTTGGGACTACTAGTGAAATTGGGGTTTTTGAAATGAA
GGAAGAGGGATTAATTCAAGTGGAAAACCCTTCTGCTATTTTTTTAGAAAGTCTAACGCCTCAAGCTGAAGGTGCCATTG
TTGTAGCAATCGTAGAAGGGACAAGACCGCTACTGGTAGAGATACAGGCCTTGGTGACACCAGCTAATGCAGGCTTTCCC
AGAAGAACCGCAGTGGGGATTGATTTGAATCGGCTGAATCTAATTATTGCTGTATTAGAGAAAAAGGTAGGACTGCCATT
GATGAACCAGGATATTTATGTGAGTGTTGTAGGTGGTTTAAAGTTGGAAGGAACTTCGGCGGATTTAGGCATAGCCATGG
CTATTTATTCTAGTATGAGAGGGGTTGCCATCTCATCTCGGGATCTGATTGCATTGGGAGAAGTGAGCTTAACTGGAGAA
ATAAGAGCCATCGGTCATTTGGAAAAGATGGTCAAGGAGGCTGAAAAGTTGGGGTTTGCTTGCGGTGTGATTCCAGGTAG
AAGTAGTGCTAAGATTAAAGGGAATACCAGTATGCGAATTGAAGGTGTAAGTACCTTAAAAGAAGCGTTAAATTTAATTA
TGCCTTGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(342-425)

AAA domain (AAA_25)

(66-219)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A6TWL5

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Bacillus subtilis subsp. subtilis str. 168

53.829

100

0.541
  radA Streptococcus mitis NCTC 12261

49.78

99.78

0.497
  radA Streptococcus pneumoniae D39

50.222

98.901

0.497
  radA Streptococcus pneumoniae R6

50.222

98.901

0.497
  radA Streptococcus pneumoniae TIGR4

50.222

98.901

0.497
  radA Streptococcus pneumoniae Rx1

50.222

98.901

0.497
  radA Streptococcus mitis SK321

50.222

98.901

0.497

Multiple sequence alignment