Detailed information NTG0283780

Bioinformatically predicted

Overview

• Name: recQ
• Type: Machinery gene
• Locus tag: EFD52_RS08400
• Genome accession: NZ_CP033606
• Coordinates: 1730634..1732412 (+)
• Length: 592 a.a.
• NCBI ID: WP_010906147.1
• Uniprot ID: Q9CEM9
• Organism: Lactococcus lactis strain IL6288
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1725634..1737412

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EFD52_RS08380 (EFD52_08380)	-	1725722..1727395 (-)	1674	WP_010906146.1	polysaccharide biosynthesis protein	-
EFD52_RS08385 (EFD52_08385)	-	1727605..1729056 (+)	1452	WP_003130330.1	UDP-N-acetylmuramoyl-L-alanyl-D-glutamate--2, 6-diaminopimelate ligase	-
EFD52_RS08390 (EFD52_08390)	-	1729135..1729395 (-)	261	WP_017864931.1	hypothetical protein	-
EFD52_RS08395 (EFD52_08395)	adhP	1729416..1730438 (-)	1023	WP_003130326.1	alcohol dehydrogenase AdhP	-
EFD52_RS08400 (EFD52_08400)	recQ	1730634..1732412 (+)	1779	WP_010906147.1	DNA helicase RecQ	Machinery gene
EFD52_RS08405 (EFD52_08405)	yjeM	1732448..1733974 (-)	1527	WP_003130322.1	glutamate/gamma-aminobutyrate family transporter YjeM	-
EFD52_RS08410 (EFD52_08410)	pepT	1734254..1735495 (-)	1242	WP_003130321.1	peptidase T	-
EFD52_RS08415 (EFD52_08415)	-	1735524..1736321 (-)	798	WP_010906148.1	DUF1803 domain-containing protein	-
EFD52_RS08420 (EFD52_08420)	-	1736321..1737265 (-)	945	WP_003130319.1	manganese-dependent inorganic pyrophosphatase	-

Sequence

Protein

• Length: 592 a.a.
• Molecular weight: 66958.82 Da
• Isoelectric Point: 6.4494

>NTDB_id=283780 EFD52_RS08400 WP_010906147.1 1730634..1732412(+) (recQ) [Lactococcus lactis strain IL6288]
MNLEAKLKEIFGYDNFRNGQKQIIEQVLDGQATLGILPTGAGKSICYQLPALIQPGLTLVISPLISLMKDQVDQLNIAGI
PATFINSTLEDSESYQRMRQVENGEIKLLFVAPERFSLDYFNAFLQKLPIDLVAIDEAHCISQWGHDFRPSYVDFASHLQ
YLPTNPTVLALTATATPKVADDIQKLLSISPSHTIKTGFLRENLRFEVVKGMDKRTFLKNYLKNQESEAAGIIYASTRKE
VEEICEWLNHNHFKSVRYHAGLSEQERQINQELFLFDEVPIMVATNAFGMGINKPNVRFVIHYALPATIESYYQEAGRAG
RDGLESDANLLFSPNDLRIRNFLIEQSEGDEAHKEHEYEKLRQMQAYTSAETCLQRYILQYFGDEGEDCKKCSNCLDERE
LLDITIDAQKVLSCVVRMGERFGKTAVAQVLIGSKNKNIAKWNFESLSTFGIMKNHSQKTVGELIDFLSAESYLNITSGK
FPLLLLSAQGLKVLKGQIKVYRKASLIIESKTKISHHFDEECFASIRALRLELAKEEGVPPFMIFSDSALKEMAQVLPDS
QSQFLQISGVGPVKLKKYGRLFIDKISEYKKS

Nucleotide

• Length: 1779 bp

>NTDB_id=283780 EFD52_RS08400 WP_010906147.1 1730634..1732412(+) (recQ) [Lactococcus lactis strain IL6288]
ATGAATTTAGAAGCTAAATTAAAAGAAATTTTTGGTTATGACAATTTCCGAAATGGTCAGAAACAAATTATTGAACAAGT
CCTAGATGGACAAGCCACTCTTGGTATTTTACCCACAGGAGCTGGAAAATCAATCTGCTATCAGTTACCAGCTCTTATTC
AACCAGGGCTTACTCTCGTAATCTCCCCACTTATTAGCTTGATGAAAGATCAAGTCGACCAGCTGAATATTGCCGGAATT
CCAGCAACATTTATTAACTCTACCTTAGAGGATTCCGAATCTTATCAAAGAATGCGACAGGTTGAAAATGGCGAAATCAA
GCTTCTTTTTGTAGCACCAGAGCGTTTTTCATTAGACTATTTCAATGCCTTTTTACAAAAACTTCCAATTGATTTAGTTG
CCATAGACGAAGCACACTGCATTTCACAATGGGGGCACGATTTCAGACCCAGTTATGTCGATTTTGCCTCTCATCTCCAA
TATTTACCAACAAATCCTACCGTCTTAGCCCTTACGGCTACTGCGACACCAAAAGTTGCAGATGATATTCAAAAACTTCT
TTCAATTTCCCCCAGTCATACTATTAAAACCGGTTTTCTTAGAGAAAACTTACGTTTTGAAGTAGTCAAAGGGATGGATA
AGAGAACTTTTCTTAAAAATTATCTTAAAAATCAAGAAAGTGAGGCTGCTGGAATTATCTATGCAAGCACTCGTAAAGAA
GTTGAAGAAATTTGTGAATGGCTCAACCATAATCATTTCAAATCCGTTCGTTACCATGCTGGACTGAGCGAACAGGAACG
TCAAATAAATCAAGAACTTTTTCTCTTTGACGAAGTACCGATAATGGTTGCCACTAATGCTTTTGGCATGGGAATCAATA
AACCAAATGTTCGATTTGTGATTCATTATGCCCTTCCCGCAACAATTGAAAGTTATTATCAAGAAGCTGGGCGAGCAGGA
CGGGACGGGCTTGAATCTGATGCTAACCTCCTTTTTTCACCAAATGATTTACGAATTCGTAATTTCTTGATTGAGCAAAG
TGAAGGTGATGAAGCGCACAAGGAACATGAATACGAAAAGCTTCGACAAATGCAAGCATACACAAGTGCCGAAACCTGTT
TACAACGCTATATCTTGCAATATTTTGGTGATGAAGGTGAAGATTGTAAAAAATGTAGTAATTGTCTTGATGAAAGAGAG
CTTCTCGATATTACAATTGATGCTCAAAAAGTCCTATCTTGTGTCGTCCGAATGGGTGAACGTTTTGGTAAGACGGCCGT
AGCACAAGTTTTGATTGGTTCTAAAAATAAAAATATTGCCAAATGGAATTTTGAATCTCTATCGACTTTTGGAATTATGA
AAAACCATTCCCAAAAGACCGTGGGTGAATTAATCGATTTTCTATCTGCTGAAAGTTATTTAAACATTACATCAGGTAAA
TTCCCACTTCTCCTTCTTTCAGCCCAAGGATTAAAAGTCCTCAAAGGACAAATCAAAGTTTATCGCAAAGCTAGCCTAAT
TATTGAATCGAAAACAAAAATTTCTCATCATTTTGATGAAGAATGTTTTGCAAGTATTCGTGCACTTCGACTTGAACTAG
CCAAGGAAGAAGGCGTCCCTCCTTTCATGATTTTTTCTGATAGTGCCCTTAAAGAAATGGCTCAAGTTCTGCCGGATAGT
CAAAGTCAATTTTTACAAATTTCTGGTGTCGGACCTGTTAAACTCAAAAAATATGGAAGGCTTTTTATCGACAAAATATC
TGAATATAAAAAAAGCTGA

Domains

Predicted by InterProScan.

• DEAD/DEAH box helicase (DEAD) (19-179)

• Helicase conserved C-terminal domain (Helicase_C) (214-322)

• RecQ zinc-binding (RecQ_Zn_bind) (335-396)

• HRDC domain (HRDC) (520-584)

• RQC domain (RQC) (399-503)

3D structure

• AlphaFold DB: Q9CEM9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recQ	Bacillus subtilis subsp. subtilis str. 168	51.107	99.155	0.507