Detailed information    

insolico Bioinformatically predicted

Overview

Name   braR   Type   Regulator
Locus tag   EFD52_RS08085 Genome accession   NZ_CP033606
Coordinates   1661868..1662539 (-) Length   223 a.a.
NCBI ID   WP_003132782.1    Uniprot ID   Q9CET7
Organism   Lactococcus lactis strain IL6288     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1656868..1667539
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS08060 (EFD52_08060) pheA 1657173..1658012 (-) 840 WP_010906115.1 prephenate dehydratase -
  EFD52_RS08065 (EFD52_08065) - 1658014..1658502 (-) 489 WP_003132788.1 shikimate kinase -
  EFD52_RS08070 (EFD52_08070) aroA 1658526..1659818 (-) 1293 WP_003132786.1 3-phosphoshikimate 1-carboxyvinyltransferase -
  EFD52_RS08075 (EFD52_08075) - 1659939..1661003 (-) 1065 WP_010906116.1 prephenate dehydrogenase -
  EFD52_RS08080 (EFD52_08080) - 1661006..1661881 (-) 876 WP_003132784.1 sensor histidine kinase -
  EFD52_RS08085 (EFD52_08085) braR 1661868..1662539 (-) 672 WP_003132782.1 response regulator transcription factor Regulator
  EFD52_RS08090 (EFD52_08090) - 1662542..1663606 (-) 1065 WP_003132781.1 VanZ family protein -
  EFD52_RS08095 (EFD52_08095) - 1663787..1665790 (-) 2004 WP_010906117.1 ABC transporter permease -
  EFD52_RS08100 (EFD52_08100) - 1665783..1666562 (-) 780 WP_003132777.1 ABC transporter ATP-binding protein -
  EFD52_RS10930 - 1666577..1666720 (-) 144 WP_014570691.1 hypothetical protein -
  EFD52_RS08105 (EFD52_08105) - 1666751..1667110 (-) 360 WP_010906119.1 YxeA family protein -

Sequence

Protein


Download         Length: 223 a.a.        Molecular weight: 25510.44 Da        Isoelectric Point: 4.8093

>NTDB_id=283775 EFD52_RS08085 WP_003132782.1 1661868..1662539(-) (braR) [Lactococcus lactis strain IL6288]
MTKIFIVEDDEIIVKAIKIALEKEFQVRSVSNFRAVKQEIMEFEADLVLMDIGLPFYSGFYWTNELRKLSQIPIIFISSA
SDDMNQVTAMNQGADDFVTKPFSLEILNAKIKALLRRSYSFSGIEKLEFAGYVLSENTLISTQEGEREEIELTSSENKIL
TLLFRGNGEVVTKEKILQELWQTDEFIDANTLNVKMTRLRKKLGEIGFDKHIMTKRGSGYALV

Nucleotide


Download         Length: 672 bp        

>NTDB_id=283775 EFD52_RS08085 WP_003132782.1 1661868..1662539(-) (braR) [Lactococcus lactis strain IL6288]
ATGACTAAAATATTTATTGTAGAAGATGATGAAATTATTGTGAAAGCAATTAAGATTGCCTTAGAAAAAGAATTTCAAGT
CAGAAGTGTTTCCAATTTTCGAGCAGTAAAACAAGAAATTATGGAATTTGAAGCAGATTTAGTATTAATGGATATTGGGC
TACCATTTTATAGTGGTTTTTATTGGACAAATGAATTAAGAAAGCTTTCCCAAATTCCTATTATCTTTATTTCTTCGGCA
TCGGATGACATGAATCAAGTAACCGCTATGAATCAAGGAGCTGATGATTTTGTAACCAAGCCGTTTTCATTAGAAATTTT
AAATGCAAAAATAAAAGCTTTACTGCGCAGAAGTTATTCTTTTTCAGGGATTGAAAAGTTAGAATTTGCTGGTTATGTTT
TATCTGAAAATACTTTGATTTCAACTCAAGAAGGTGAACGCGAAGAAATTGAGCTTACAAGTTCTGAAAATAAAATTTTA
ACTCTTCTTTTTCGTGGAAATGGTGAAGTGGTGACCAAGGAAAAAATTCTACAAGAGTTGTGGCAAACAGATGAATTTAT
TGATGCAAATACTTTAAATGTAAAAATGACTCGTTTACGCAAAAAACTTGGTGAAATTGGCTTTGATAAGCATATTATGA
CAAAAAGAGGAAGTGGTTATGCTCTGGTTTAA

Domains

Predicted by InterProScan.

Transcriptional regulatory protein, C terminal (Trans_reg_C)

(148-222)

Response regulator receiver domain (Response_reg)

(4-111)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CET7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  braR Staphylococcus aureus N315

41.441

99.552

0.413

Multiple sequence alignment