Detailed information    

insolico Bioinformatically predicted

Overview

Name   xerS   Type   Machinery gene
Locus tag   EFD52_RS05730 Genome accession   NZ_CP033606
Coordinates   1156857..1157927 (-) Length   356 a.a.
NCBI ID   WP_003131037.1    Uniprot ID   Q9CG78
Organism   Lactococcus lactis strain IL6288     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1151857..1162927
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS05715 (EFD52_05715) dprA 1152157..1153004 (+) 848 Protein_1102 DNA-processing protein DprA -
  EFD52_RS05720 (EFD52_05720) topA 1153265..1155397 (+) 2133 WP_003131148.1 type I DNA topoisomerase -
  EFD52_RS05725 (EFD52_05725) trmFO 1155469..1156812 (+) 1344 WP_003131150.1 methylenetetrahydrofolate--tRNA-(uracil(54)- C(5))-methyltransferase (FADH(2)-oxidizing) TrmFO -
  EFD52_RS05730 (EFD52_05730) xerS 1156857..1157927 (-) 1071 WP_003131037.1 tyrosine recombinase XerS Machinery gene
  EFD52_RS11135 - 1158519..1159133 (-) 615 Protein_1106 tyrosine-type recombinase/integrase -
  EFD52_RS10895 - 1159282..1159419 (-) 138 WP_153915251.1 hypothetical protein -
  EFD52_RS05750 (EFD52_05750) - 1160319..1162037 (+) 1719 WP_010905842.1 CocE/NonD family hydrolase -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41397.21 Da        Isoelectric Point: 9.6568

>NTDB_id=283761 EFD52_RS05730 WP_003131037.1 1156857..1157927(-) (xerS) [Lactococcus lactis strain IL6288]
MKREQLIQNIEKLKHIMPSYVLEYYQSKLTIPYSLNTLYEYLKEYERFFSWLVDSGVADVDKITDVSLSVLENLTKRDLE
SFILYLRERPRLNTRSTRYGVSQTTINRTLSALSSLYKYLTEEVENEDGEPYFYRNVMKKVQTKKKSETLASRAENIKGK
LFLGDETQGFLDYIDNEYEKTLSNRARSSFFKNKERDLAIIALILASGIRLSEAVNVDLRDLNLITMVVEVTRKGGKRDA
VPYAPFAKTYFERYLEVRSQRYKTTAKDTAFFVTLYRDVPSRIDPSSVEKLVAKYSQAFKVRVTPHKLRHTLATRLYAQT
NSQVLVSNQLGHASTQVTDLYTHIINEEQKNALDNL

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=283761 EFD52_RS05730 WP_003131037.1 1156857..1157927(-) (xerS) [Lactococcus lactis strain IL6288]
ATGAAACGTGAACAATTAATACAAAATATTGAAAAACTAAAACACATCATGCCTTCTTATGTTTTAGAATATTATCAATC
TAAACTTACTATTCCTTATAGTTTGAATACACTTTATGAATATCTTAAAGAATATGAACGTTTCTTTAGTTGGTTGGTCG
ATTCTGGAGTTGCTGATGTTGATAAGATAACTGATGTTTCCCTCTCTGTTTTAGAAAACTTAACTAAACGAGATTTGGAG
TCATTTATCCTCTATCTTAGGGAGAGACCCCGTTTAAATACGCGCTCTACTCGTTATGGGGTAAGTCAAACAACAATTAA
TCGTACTCTATCTGCTCTTTCTAGTCTTTATAAATACCTTACTGAAGAGGTTGAAAATGAAGATGGTGAGCCTTACTTCT
ATCGTAATGTTATGAAGAAGGTACAGACTAAGAAAAAATCCGAAACTTTAGCTTCTCGTGCTGAGAATATTAAAGGGAAG
CTTTTTTTGGGAGATGAAACTCAAGGTTTTCTTGACTATATTGATAATGAATATGAAAAAACATTATCAAATAGAGCTCG
TTCTAGTTTTTTCAAAAATAAAGAACGTGATTTAGCAATTATTGCACTTATTTTAGCCTCTGGTATTCGTCTTTCTGAGG
CAGTTAATGTAGATTTAAGAGATTTAAATCTTATTACTATGGTTGTTGAGGTAACTCGTAAAGGAGGAAAAAGGGATGCT
GTTCCTTATGCTCCTTTTGCCAAAACTTATTTTGAAAGATACTTGGAAGTACGAAGTCAACGTTATAAGACTACAGCGAA
AGATACGGCATTTTTTGTGACACTTTATAGAGACGTTCCTAGCCGAATAGATCCTTCTAGTGTTGAAAAATTAGTTGCTA
AATATTCTCAAGCTTTTAAAGTGCGAGTGACCCCTCACAAGCTTAGACATACACTTGCGACTCGACTTTATGCTCAAACA
AATTCTCAGGTATTGGTGAGCAATCAGTTAGGGCATGCTTCAACTCAAGTTACAGACCTTTATACTCATATTATCAATGA
AGAACAAAAAAATGCTCTAGATAATCTATAA

Domains

Predicted by InterProScan.

Phage integrase family (Phage_integrase)

(182-344)

Phage integrase, N-terminal SAM-like domain (Phage_int_SAM_4)

(33-122)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CG78

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  xerS Streptococcus pneumoniae R6

76.685

100

0.767