Detailed information    

insolico Bioinformatically predicted

Overview

Name   treR   Type   Regulator
Locus tag   EFD52_RS02135 Genome accession   NZ_CP033606
Coordinates   421580..422296 (-) Length   238 a.a.
NCBI ID   WP_003131538.1    Uniprot ID   Q9CID8
Organism   Lactococcus lactis strain IL6288     
Function   regulate expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 416580..427296
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EFD52_RS02120 (EFD52_02120) cdaA 418274..419152 (+) 879 WP_003131542.1 diadenylate cyclase CdaA -
  EFD52_RS11250 (EFD52_02125) - 419142..420100 (+) 959 Protein_403 CdaR family protein -
  EFD52_RS02130 (EFD52_02130) glmM 420146..421504 (+) 1359 WP_003131539.1 phosphoglucosamine mutase -
  EFD52_RS02135 (EFD52_02135) treR 421580..422296 (-) 717 WP_003131538.1 trehalose operon repressor Regulator
  EFD52_RS02140 (EFD52_02140) - 422407..422892 (+) 486 WP_003131536.1 PTS glucose transporter subunit IIA -
  EFD52_RS02145 (EFD52_02145) - 423029..424594 (+) 1566 WP_021214847.1 PTS transporter subunit EIIC -
  EFD52_RS02150 (EFD52_02150) - 424662..426971 (+) 2310 WP_010905330.1 glycoside hydrolase family 65 protein -

Sequence

Protein


Download         Length: 238 a.a.        Molecular weight: 27865.52 Da        Isoelectric Point: 6.4168

>NTDB_id=283745 EFD52_RS02135 WP_003131538.1 421580..422296(-) (treR) [Lactococcus lactis strain IL6288]
MKKYEVILQDLEKKIFNDIYKTNDILPSENELSANYESSRSTVRQALKILEEKGLIQRRHGYGSIVLAHDRLLFPISGLT
SYKELQTSMGFHSETEVIRFERLEINPKLSETTGFAVGEHAISILRRRKVDGKFSILDWDLFLEKYSEGLTPEHAKISTY
DYLEDTLGLDIAYAQKEVTIDFACEDDFKYLDLNPKDHHVVSVKSHVYLADNTLFQYTESRHQVDRFRFTEFARRQKR

Nucleotide


Download         Length: 717 bp        

>NTDB_id=283745 EFD52_RS02135 WP_003131538.1 421580..422296(-) (treR) [Lactococcus lactis strain IL6288]
ATGAAGAAATATGAAGTGATTTTGCAAGATTTAGAAAAAAAGATTTTTAACGATATCTATAAAACGAACGATATTCTTCC
AAGTGAAAATGAGCTCTCTGCTAATTACGAGAGCAGTCGTTCAACAGTCAGACAGGCTTTAAAAATTTTAGAAGAGAAAG
GGCTTATTCAAAGACGACATGGCTATGGTAGCATTGTCCTCGCTCACGATAGGCTCCTTTTCCCTATCTCTGGCTTAACT
TCATACAAAGAACTACAAACCTCTATGGGTTTCCATAGTGAAACTGAGGTCATTCGATTTGAAAGACTTGAAATTAACCC
TAAACTTTCAGAAACAACTGGTTTTGCCGTTGGTGAACACGCCATAAGTATTCTCAGAAGGCGCAAAGTAGATGGCAAAT
TTTCAATTTTAGATTGGGATTTATTTTTAGAAAAATATTCCGAAGGTTTAACTCCAGAACATGCTAAAATTTCAACCTAT
GACTACTTAGAAGATACTCTAGGGCTTGATATTGCCTATGCTCAAAAGGAAGTCACGATTGATTTTGCCTGCGAAGATGA
CTTTAAATATCTTGACTTAAATCCCAAAGACCATCATGTCGTGTCTGTCAAATCTCATGTTTATCTTGCTGATAATACTC
TTTTTCAGTATACTGAATCTCGACATCAAGTCGACCGCTTTCGTTTCACAGAATTTGCCAGACGACAAAAAAGATAA

Domains

Predicted by InterProScan.

UTRA domain (UTRA)

(89-228)

Bacterial regulatory proteins, gntR family (GntR)

(4-66)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q9CID8

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  treR Streptococcus mutans UA159

46.414

99.58

0.462