Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA   Type   Machinery gene
Locus tag   C7M43_RS07750 Genome accession   NZ_CP028251
Coordinates   1559045..1560415 (-) Length   456 a.a.
NCBI ID   WP_080506298.1    Uniprot ID   -
Organism   Leuconostoc mesenteroides strain SRCM102733     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1554045..1565415
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M43_RS07730 (C7M43_01555) gltX 1555067..1556563 (-) 1497 WP_011679119.1 glutamate--tRNA ligase -
  C7M43_RS07735 (C7M43_01556) - 1556662..1557249 (-) 588 WP_011679118.1 TetR/AcrR family transcriptional regulator -
  C7M43_RS07740 (C7M43_01557) - 1557384..1558622 (+) 1239 WP_011679117.1 YhgE/Pip domain-containing protein -
  C7M43_RS07745 (C7M43_01558) - 1558668..1559042 (-) 375 WP_011679116.1 hypothetical protein -
  C7M43_RS07750 (C7M43_01559) radA 1559045..1560415 (-) 1371 WP_080506298.1 DNA repair protein RadA Machinery gene
  C7M43_RS07755 (C7M43_01560) - 1560463..1561002 (-) 540 WP_011679115.1 deoxyuridine 5'-triphosphate nucleotidohydrolase -
  C7M43_RS07760 (C7M43_01561) - 1561235..1561516 (+) 282 WP_011679114.1 GNAT family N-acetyltransferase -
  C7M43_RS07765 (C7M43_01562) rpiA 1561513..1562199 (+) 687 WP_002816154.1 ribose-5-phosphate isomerase RpiA -
  C7M43_RS07770 (C7M43_01563) - 1562317..1563747 (+) 1431 WP_010292838.1 aspartate ammonia-lyase -
  C7M43_RS07775 (C7M43_01564) - 1563779..1564717 (-) 939 WP_011679113.1 DUF1810 family protein -

Sequence

Protein


Download         Length: 456 a.a.        Molecular weight: 49228.50 Da        Isoelectric Point: 5.8843

>NTDB_id=283728 C7M43_RS07750 WP_080506298.1 1559045..1560415(-) (radA) [Leuconostoc mesenteroides strain SRCM102733]
MAKVKTQFICSNCGFVSARYLGRCSNCGEWGTLVEEKIQPESNDRKSRVSLDGRNAKVEKINEITSEETPRVATKLKELN
RVLGGGVVPGSMVLIGGDPGIGKSTLLLQVSGQLAQEGRVLYVTGEESATQVKLRADRLGVGHDEFYLYPETDMTAVKKQ
IEELQPNFVVIDSVQTMQEPDVSSAVGSVSQIREVTADLLQIAKTNNISIFIVGHVTKDGAIAGPKILEHMVDTVLYFEG
DSNYKYRILRAVKNRFGATNELGIFEMRNGGLIEVANPSEIFLEERLSGATGSAIVVALEGSRPILVELQALVTPTVFGN
AQRTAAGLDRNRVSLIMAVLEKRANLLLQNQDAYLKAAGGVKLDEPAIDLAIAVALASSYHDKESRPSDVFVGEIGLTGE
VRSVADIEGRLKEAKKLGFKRAIVPKNNLNGIELPQGIKVIGVTTLSEALKIALGE

Nucleotide


Download         Length: 1371 bp        

>NTDB_id=283728 C7M43_RS07750 WP_080506298.1 1559045..1560415(-) (radA) [Leuconostoc mesenteroides strain SRCM102733]
ATCGCTAAAGTAAAAACACAATTTATATGTTCCAACTGCGGTTTTGTTTCGGCGCGGTATTTAGGACGCTGCTCAAATTG
TGGTGAATGGGGCACGCTTGTTGAAGAAAAAATCCAACCAGAATCAAATGATCGTAAAAGTCGTGTGAGTCTAGATGGAC
GCAATGCTAAAGTTGAAAAAATAAACGAGATTACATCTGAAGAGACACCGCGCGTAGCAACTAAGCTTAAAGAACTAAAC
CGAGTTTTAGGTGGTGGTGTTGTCCCAGGTTCGATGGTTTTGATTGGTGGTGATCCTGGTATTGGCAAGTCAACATTACT
ACTTCAAGTATCTGGACAACTTGCTCAAGAAGGACGGGTACTATATGTGACCGGCGAAGAGTCTGCCACACAAGTGAAAC
TGCGTGCCGACCGCTTAGGCGTTGGGCACGATGAGTTTTATTTATATCCGGAAACGGATATGACGGCCGTGAAAAAGCAG
ATTGAGGAATTACAACCGAATTTTGTTGTTATTGACTCGGTACAAACCATGCAAGAACCTGATGTCTCATCGGCTGTTGG
ATCAGTGTCACAAATTCGAGAAGTGACAGCCGATCTGTTGCAAATCGCTAAGACTAATAATATTTCTATATTTATAGTAG
GGCATGTGACTAAAGATGGCGCCATAGCGGGGCCAAAAATTCTGGAGCACATGGTTGATACAGTATTGTACTTTGAAGGA
GATAGTAATTATAAGTACCGCATTCTGCGTGCGGTTAAAAATCGGTTTGGCGCAACGAATGAATTAGGTATTTTTGAAAT
GCGTAATGGCGGTTTGATAGAGGTAGCTAATCCCTCTGAGATTTTCTTAGAAGAACGTTTATCTGGTGCCACTGGATCGG
CAATTGTGGTCGCGTTAGAAGGATCACGACCTATTTTGGTTGAATTACAAGCCTTAGTAACGCCGACTGTATTTGGTAAC
GCACAGCGTACAGCAGCAGGCCTCGATAGGAATCGCGTGTCATTGATTATGGCTGTATTAGAAAAACGCGCTAACCTATT
ATTACAAAATCAAGATGCGTATTTAAAGGCAGCAGGTGGCGTGAAACTTGATGAACCAGCAATTGATTTAGCGATTGCTG
TTGCTCTAGCTAGTTCGTATCATGATAAAGAATCAAGGCCAAGTGATGTCTTTGTTGGCGAAATTGGTCTAACTGGCGAA
GTCCGTAGCGTAGCAGATATTGAAGGACGATTAAAAGAAGCTAAAAAATTGGGCTTTAAGCGTGCCATTGTTCCTAAAAA
TAATTTAAATGGCATCGAATTACCTCAAGGTATTAAAGTTATTGGAGTAACAACATTAAGTGAGGCGCTTAAAATTGCCT
TAGGAGAATGA

Domains

Predicted by InterproScan.

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(8-35)

Subunit ChlI of Mg-chelatase (ChlI)

(362-428)

AAA domain (AAA_25)

(68-220)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA Streptococcus pneumoniae Rx1

66.962

98.904

0.662
  radA Streptococcus pneumoniae D39

66.962

98.904

0.662
  radA Streptococcus pneumoniae R6

66.962

98.904

0.662
  radA Streptococcus pneumoniae TIGR4

66.962

98.904

0.662
  radA Streptococcus mitis NCTC 12261

66.741

98.904

0.66
  radA Streptococcus mitis SK321

66.741

98.904

0.66
  radA Bacillus subtilis subsp. subtilis str. 168

61.488

100

0.616

Multiple sequence alignment