Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EEL45_RS19240 Genome accession   NZ_CP033605
Coordinates   3641484..3641999 (-) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli O157:H7 strain TR01     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 3636484..3646999
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL45_RS19215 (EEL45_19215) ygaZ 3636882..3637619 (+) 738 WP_000445658.1 L-valine exporter subunit YgaZ -
  EEL45_RS19220 (EEL45_19220) ygaH 3637609..3637944 (+) 336 WP_000119749.1 L-valine transporter subunit YgaH -
  EEL45_RS19225 (EEL45_19225) emrR 3638035..3638565 (+) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EEL45_RS19230 (EEL45_19230) emrA 3638692..3639864 (+) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EEL45_RS19235 (EEL45_19235) emrB 3639881..3641419 (+) 1539 WP_001295176.1 multidrug efflux MFS transporter permease subunit EmrB -
  EEL45_RS19240 (EEL45_19240) luxS 3641484..3641999 (-) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EEL45_RS19245 (EEL45_19245) gshA 3642149..3643705 (-) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EEL45_RS19250 (EEL45_19250) yqaA 3643778..3644206 (-) 429 WP_001287454.1 YqaA family protein -
  EEL45_RS19255 (EEL45_19255) yqaB 3644203..3644769 (-) 567 WP_032281482.1 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EEL45_RS19285 (EEL45_19285) csrA 3645997..3646182 (-) 186 WP_000906486.1 carbon storage regulator CsrA -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=283686 EEL45_RS19240 WP_001130211.1 3641484..3641999(-) (luxS) [Escherichia coli O157:H7 strain TR01]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=283686 EEL45_RS19240 WP_001130211.1 3641484..3641999(-) (luxS) [Escherichia coli O157:H7 strain TR01]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTGCGCATCAACAGCAACGAAGAACTGGCG
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATTTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731