Detailed information    

insolico Bioinformatically predicted

Overview

Name   sbcB   Type   Machinery gene
Locus tag   EEL45_RS14415 Genome accession   NZ_CP033605
Coordinates   2718682..2720106 (+) Length   474 a.a.
NCBI ID   WP_123178432.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain TR01     
Function   promote homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2713682..2725106
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL45_RS14365 (EEL45_14365) - 2713846..2714061 (+) 216 WP_000188870.1 hypothetical protein -
  EEL45_RS14370 (EEL45_14370) - 2714160..2714381 (+) 222 WP_000763383.1 TraR/DksA family transcriptional regulator -
  EEL45_RS14375 (EEL45_14375) - 2714378..2715325 (+) 948 WP_001289930.1 ead/Ea22-like family protein -
  EEL45_RS14380 (EEL45_14380) - 2715327..2715503 (+) 177 WP_001356547.1 hypothetical protein -
  EEL45_RS14390 (EEL45_14390) - 2715837..2716193 (+) 357 WP_000207903.1 hypothetical protein -
  EEL45_RS14395 (EEL45_14395) - 2716190..2716540 (+) 351 WP_000610373.1 DUF551 domain-containing protein -
  EEL45_RS14400 (EEL45_14400) - 2716728..2717072 (+) 345 WP_001281188.1 hypothetical protein -
  EEL45_RS14405 (EEL45_14405) - 2717150..2717341 (+) 192 WP_000132739.1 AlpA family phage regulatory protein -
  EEL45_RS14410 (EEL45_14410) - 2717322..2718500 (-) 1179 WP_001007946.1 site-specific integrase -
  EEL45_RS14415 (EEL45_14415) sbcB 2718682..2720106 (+) 1425 WP_123178432.1 exodeoxyribonuclease I Machinery gene
  EEL45_RS14420 (EEL45_14420) tsuB 2720149..2720376 (-) 228 WP_000985273.1 thiosulfate utilization sulfurtransferase TsuB/YeeD -
  EEL45_RS14425 (EEL45_14425) tsuA 2720390..2721448 (-) 1059 WP_000492346.1 thiosulfate utilization transporter TsuA/YeeE -
  EEL45_RS14430 (EEL45_14430) plaP 2721627..2722985 (-) 1359 WP_071549956.1 putrescine/proton symporter PlaP -
  EEL45_RS14435 (EEL45_14435) yoeI 2722975..2723037 (-) 63 WP_010723108.1 membrane protein YoeI -
  EEL45_RS14440 (EEL45_14440) yeeY 2723252..2724181 (-) 930 WP_000803351.1 LysR substrate-binding domain-containing protein -
  EEL45_RS14445 (EEL45_14445) yeeZ 2724227..2725051 (-) 825 WP_000754752.1 SDR family oxidoreductase -

Sequence

Protein


Download         Length: 474 a.a.        Molecular weight: 54301.41 Da        Isoelectric Point: 5.2371

>NTDB_id=283677 EEL45_RS14415 WP_123178432.1 2718682..2720106(+) (sbcB) [Escherichia coli O157:H7 strain TR01]
MTDTDKQPTFLFHDYETFGTHPALDRPAQFAAIRTDSEFNVIGEPEVFYCKPADDYLPQPGAVLITGITPQEARAKGENE
AAFAARIHSLFTVPKTCILGYNNVRFDDEVTRNVFYRNFYDPYAWSWQHDNSRWDLLDVMRACYALRPEGINWPENDDGL
PSFRLEHLTKANGIEHSNAHDAMADVYATIAMAKLVKTRQPRLFDYLFTHRNKHKLMALIDVPQMNPLVHVSGMFGAWRG
NTSWVAPLAWHPENRNAVIMVDLSGDISPLLELDSDTLRERLYTAKADLGDNAAVPVKLVHINKCPVLAQANTLRPEDAD
RLGINRQHCLDNLKILRENPQVREKVVAIFAEAEPFTPSDNVDAQLYNGFFSDADRAAMKIVLETEPRNLPALDITFVDK
RIEKLLFNYRARNFPGTLDYAEQQRWLEHRRQVFTPEFLQGYADELQMLAQQYADDKEKVALSKALWQYAEEIV

Nucleotide


Download         Length: 1425 bp        

>NTDB_id=283677 EEL45_RS14415 WP_123178432.1 2718682..2720106(+) (sbcB) [Escherichia coli O157:H7 strain TR01]
ATGACAGACACAGATAAGCAACCTACCTTCCTCTTTCACGATTACGAAACCTTTGGCACGCACCCCGCGTTAGATCGCCC
TGCACAGTTCGCAGCCATTCGCACCGATAGCGAATTCAATGTCATCGGCGAACCCGAAGTCTTTTACTGCAAGCCCGCGG
ATGACTATTTACCCCAGCCTGGAGCAGTATTAATTACCGGTATTACCCCGCAGGAAGCACGGGCGAAAGGAGAAAACGAA
GCCGCGTTTGCCGCCCGTATTCACTCGCTTTTTACCGTACCGAAGACCTGTATTCTGGGCTACAACAATGTGCGTTTCGA
CGACGAAGTCACACGCAACGTTTTTTATCGTAATTTCTACGATCCTTACGCCTGGAGCTGGCAGCATGATAACTCGCGCT
GGGATTTGCTGGATGTTATGCGTGCCTGTTATGCCCTGCGCCCGGAAGGAATAAACTGGCCTGAAAATGATGACGGTCTA
CCGAGCTTTCGCCTTGAGCATTTAACCAAAGCGAATGGTATTGAACATAGCAACGCCCACGATGCGATGGCTGATGTGTA
CGCCACTATTGCGATGGCGAAACTGGTAAAAACGCGTCAGCCACGCCTGTTTGATTATCTCTTTACCCATCGTAATAAAC
ACAAACTGATGGCGTTGATTGATGTTCCGCAGATGAACCCCCTGGTGCACGTTTCCGGAATGTTTGGGGCATGGCGCGGC
AACACCAGCTGGGTGGCACCGCTGGCGTGGCATCCTGAAAATCGCAATGCCGTAATTATGGTGGATTTGTCAGGAGACAT
TTCGCCATTACTGGAACTGGATAGCGACACATTGCGCGAGCGTTTATATACTGCAAAAGCCGATCTTGGCGATAACGCCG
CCGTTCCGGTTAAGCTGGTGCATATCAATAAATGTCCGGTGCTGGCCCAGGCGAATACGCTACGCCCGGAAGATGCCGAC
CGACTGGGAATTAATCGTCAGCATTGCCTCGATAACCTGAAAATTCTGCGTGAAAATCCGCAAGTGCGCGAAAAAGTGGT
GGCGATATTCGCGGAAGCCGAACCGTTTACGCCTTCAGATAACGTGGATGCACAGCTTTATAACGGCTTTTTCAGTGACG
CCGATCGTGCAGCAATGAAAATTGTGCTGGAAACCGAGCCGCGTAATTTACCGGCACTGGATATCACTTTTGTCGATAAA
CGGATTGAAAAGCTGTTGTTCAATTATCGGGCGCGCAACTTCCCGGGGACGCTGGATTATGCCGAGCAGCAACGCTGGCT
GGAGCACCGCCGCCAGGTCTTCACGCCAGAGTTTTTACAGGGTTATGCAGATGAATTGCAGATGCTGGCACAACAATATG
CCGATGACAAAGAGAAAGTGGCGCTGTCAAAAGCGCTTTGGCAGTACGCGGAAGAGATCGTCTAA

Domains

Predicted by InterProScan.

Exonuclease C-terminal (ExoI_SH3)

(211-471)

Exonuclease (RNase_T)

(12-187)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sbcB Vibrio cholerae O1 biovar El Tor strain E7946

58.936

99.156

0.584

Multiple sequence alignment