Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EEL45_RS13900 Genome accession   NZ_CP033605
Coordinates   2654979..2655455 (+) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain TR01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2649979..2660455
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL45_RS13865 (EEL45_13865) - 2650144..2651049 (+) 906 WP_000203545.1 diguanylate cyclase regulator RdcB family protein -
  EEL45_RS13870 (EEL45_13870) - 2651046..2652116 (+) 1071 WP_000102660.1 patatin-like phospholipase family protein -
  EEL45_RS13875 (EEL45_13875) - 2652252..2652935 (+) 684 WP_000775500.1 hypothetical protein -
  EEL45_RS13880 (EEL45_13880) - 2652951..2653361 (+) 411 WP_000846713.1 hypothetical protein -
  EEL45_RS13890 (EEL45_13890) - 2653582..2654403 (+) 822 WP_001234530.1 DUF932 domain-containing protein -
  EEL45_RS13895 (EEL45_13895) - 2654485..2654964 (+) 480 WP_000860076.1 antirestriction protein -
  EEL45_RS13900 (EEL45_13900) radC 2654979..2655455 (+) 477 WP_001186773.1 RadC family protein Machinery gene
  EEL45_RS13905 (EEL45_13905) yeeT 2655518..2655739 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EEL45_RS13910 (EEL45_13910) cbeA 2655819..2656187 (+) 369 WP_021557898.1 type IV toxin-antitoxin system cytoskeleton bundling-enhancing antitoxin CbeA -
  EEL45_RS13915 (EEL45_13915) cbtA 2656276..2656649 (+) 374 Protein_2672 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EEL45_RS13920 (EEL45_13920) yeeW 2656646..2656840 (+) 195 WP_000988600.1 DUF5983 family protein -
  EEL45_RS28815 (EEL45_13925) - 2656886..2656966 (+) 81 Protein_2674 hypothetical protein -
  EEL45_RS29190 (EEL45_13930) - 2657255..2657362 (-) 108 WP_074147515.1 transposase domain-containing protein -
  EEL45_RS29575 - 2657314..2657637 (+) 324 WP_349813497.1 EutP/PduV family microcompartment system protein -
  EEL45_RS13940 (EEL45_13940) tmaR 2657738..2658067 (-) 330 WP_000450409.1 DUF496 family protein -
  EEL45_RS13945 (EEL45_13945) yeeA 2658239..2659297 (-) 1059 WP_001200892.1 FUSC family protein -
  EEL45_RS13950 (EEL45_13950) sbmC 2659496..2659969 (-) 474 WP_001105385.1 DNA gyrase inhibitor SbmC -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=283676 EEL45_RS13900 WP_001186773.1 2654979..2655455(+) (radC) [Escherichia coli O157:H7 strain TR01]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=283676 EEL45_RS13900 WP_001186773.1 2654979..2655455(+) (radC) [Escherichia coli O157:H7 strain TR01]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392