Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EEL45_RS06810 Genome accession   NZ_CP033605
Coordinates   1397667..1398143 (+) Length   158 a.a.
NCBI ID   WP_123178251.1    Uniprot ID   -
Organism   Escherichia coli O157:H7 strain TR01     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1392667..1403143
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL45_RS06785 (EEL45_06785) - 1393945..1394850 (+) 906 WP_000203541.1 diguanylate cyclase regulator RdcB family protein -
  EEL45_RS06790 (EEL45_06790) - 1394847..1395917 (+) 1071 WP_000102669.1 patatin-like phospholipase family protein -
  EEL45_RS06800 (EEL45_06800) - 1396257..1397075 (+) 819 WP_001234682.1 DUF932 domain-containing protein -
  EEL45_RS06805 (EEL45_06805) - 1397166..1397651 (+) 486 WP_000214401.1 antirestriction protein -
  EEL45_RS06810 (EEL45_06810) radC 1397667..1398143 (+) 477 WP_123178251.1 RadC family protein Machinery gene
  EEL45_RS06815 (EEL45_06815) - 1398206..1398427 (+) 222 WP_001220314.1 DUF987 domain-containing protein -
  EEL45_RS06820 (EEL45_06820) - 1398590..1398964 (+) 375 WP_001280954.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EEL45_RS06825 (EEL45_06825) - 1399011..1399385 (+) 375 WP_000854914.1 TA system toxin CbtA family protein -
  EEL45_RS06830 (EEL45_06830) - 1399382..1399873 (+) 492 WP_000976853.1 DUF5983 family protein -
  EEL45_RS06835 (EEL45_06835) - 1399885..1400082 (+) 198 WP_000839282.1 DUF957 domain-containing protein -
  EEL45_RS06840 (EEL45_06840) - 1400167..1401009 (+) 843 WP_001280481.1 DUF4942 domain-containing protein -
  EEL45_RS06850 (EEL45_06850) ghrA 1401480..1402418 (+) 939 WP_000351317.1 glyoxylate/hydroxypyruvate reductase GhrA -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17708.05 Da        Isoelectric Point: 7.2020

>NTDB_id=283664 EEL45_RS06810 WP_123178251.1 1397667..1398143(+) (radC) [Escherichia coli O157:H7 strain TR01]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIXGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=283664 EEL45_RS06810 WP_123178251.1 1397667..1398143(+) (radC) [Escherichia coli O157:H7 strain TR01]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAACAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTACTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGTAAGGCAGACCGGCTTATCACCGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGKCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

53.982

71.519

0.386