Detailed information    

insolico Bioinformatically predicted

Overview

Name   radA/sms   Type   Machinery gene
Locus tag   EES41_RS20765 Genome accession   NZ_CP033581
Coordinates   4675547..4676962 (-) Length   471 a.a.
NCBI ID   WP_008743312.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4670547..4681962
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS20740 (EES41_20735) - 4670918..4671478 (-) 561 WP_037794920.1 SigE family RNA polymerase sigma factor -
  EES41_RS20745 (EES41_20740) - 4671663..4672607 (-) 945 WP_123079840.1 A/G-specific adenine glycosylase -
  EES41_RS20750 (EES41_20745) - 4672604..4673245 (-) 642 WP_250569330.1 phosphatase PAP2 family protein -
  EES41_RS20755 (EES41_20750) - 4673469..4674230 (+) 762 WP_367995779.1 hypothetical protein -
  EES41_RS20760 (EES41_20755) disA 4674273..4675397 (-) 1125 WP_123079843.1 DNA integrity scanning diadenylate cyclase DisA Machinery gene
  EES41_RS20765 (EES41_20760) radA/sms 4675547..4676962 (-) 1416 WP_008743312.1 DNA repair protein RadA Machinery gene
  EES41_RS20770 (EES41_20765) - 4677131..4678975 (+) 1845 WP_123079844.1 sigma-70 family RNA polymerase sigma factor -
  EES41_RS20775 (EES41_20770) - 4679048..4679854 (-) 807 WP_008743314.1 hypothetical protein -
  EES41_RS20780 (EES41_20775) - 4679918..4680847 (+) 930 WP_123079845.1 Ppx/GppA phosphatase family protein -
  EES41_RS20785 (EES41_20780) - 4681125..4681931 (+) 807 WP_123082600.1 sugar phosphate isomerase/epimerase -

Sequence

Protein


Download         Length: 471 a.a.        Molecular weight: 49219.38 Da        Isoelectric Point: 8.2557

>NTDB_id=283617 EES41_RS20765 WP_008743312.1 4675547..4676962(-) (radA/sms) [Streptomyces sp. ADI95-16]
MAARTSRSSAKDRPSYRCTECGYTTAKWLGRCPECQAWGTVEEMGGAPAVRTTAAGRVSAPALPIAQVDGRTATARSTGV
DELDRVLGGGLVPGAVVLLAGEPGVGKSTLLLDVAAKAASDAHRTLYVTGEESASQVRLRADRINALSDHLYLAAETDLS
AVLGHLDAVKPSLLVLDSVQTVASPEIDGAPGGMAQVREVAGALIRASKERGMATLLVGHVTKDGAIAGPRLLEHLVDVV
LSFEGDRHARLRLVRGVKNRYGATDEVGCFELHDEGITGLADPSGLFLTRRAEAVPGTCLTVTLEGKRPLVAEVQALTVD
SQIPSPRRTTSGLETSRVSMMLAVLEQRGRITALGKRDIYSATVGGVKLTEPAADLAIALALASAASDVPLPKNLVAIGE
VGLAGEVRRVTGVQRRLAEAHRLGFTHALVPVDPGKVPAGMKVTEVADMGDALRALPRGRSRAKAPERDPN

Nucleotide


Download         Length: 1416 bp        

>NTDB_id=283617 EES41_RS20765 WP_008743312.1 4675547..4676962(-) (radA/sms) [Streptomyces sp. ADI95-16]
ATGGCTGCCCGTACATCTCGTTCATCCGCCAAGGACCGGCCGTCCTACCGCTGTACCGAGTGCGGGTACACCACCGCCAA
GTGGCTCGGGCGCTGCCCCGAGTGCCAGGCCTGGGGGACGGTGGAGGAGATGGGCGGCGCGCCCGCCGTACGGACCACCG
CGGCCGGGCGGGTGTCCGCGCCCGCGCTCCCGATCGCGCAGGTCGACGGCCGGACCGCGACCGCGCGCAGCACCGGTGTG
GACGAGCTGGACCGGGTGCTCGGCGGCGGGCTCGTGCCCGGGGCCGTCGTGCTGCTCGCGGGCGAGCCCGGCGTCGGCAA
GTCGACGCTGCTGCTGGACGTGGCGGCGAAGGCGGCCAGCGACGCGCACCGCACCCTGTACGTGACGGGTGAGGAGTCGG
CGAGCCAGGTGCGGCTGCGGGCCGACCGGATCAACGCGCTGAGCGATCACCTCTACCTCGCCGCCGAGACCGACCTGTCG
GCGGTGCTGGGACACCTCGACGCGGTGAAGCCCTCGCTGCTGGTCCTGGACTCCGTACAGACGGTGGCCTCCCCCGAGAT
CGACGGGGCGCCGGGCGGCATGGCCCAGGTGCGGGAGGTCGCCGGGGCGCTGATCCGGGCCTCCAAGGAACGCGGGATGG
CCACGCTCCTGGTCGGCCACGTCACCAAGGACGGGGCGATCGCCGGTCCCCGGCTGCTGGAGCACCTGGTGGATGTCGTG
CTGAGCTTCGAGGGCGACCGGCACGCGCGGCTGCGCCTGGTGCGCGGCGTGAAGAACCGGTACGGCGCGACGGACGAGGT
CGGCTGCTTCGAGCTCCACGACGAGGGGATCACCGGGCTCGCCGACCCGAGCGGGCTGTTCCTGACCCGGCGCGCCGAGG
CGGTGCCGGGCACCTGTCTGACGGTGACGCTGGAGGGGAAGCGTCCGCTGGTCGCGGAGGTGCAGGCGCTGACGGTGGAT
TCGCAGATCCCCTCGCCCCGGCGGACCACCTCCGGGCTGGAGACCTCGCGGGTCTCGATGATGCTGGCGGTGCTGGAGCA
GCGCGGCCGGATCACCGCGCTCGGCAAGCGGGACATCTACAGCGCGACCGTGGGCGGGGTGAAGCTGACCGAGCCGGCGG
CCGACCTGGCGATCGCGCTCGCGCTGGCCTCGGCCGCGAGCGACGTCCCGCTGCCGAAGAACCTGGTCGCGATCGGGGAG
GTCGGCCTGGCGGGCGAGGTGCGGCGGGTGACGGGCGTACAGCGGCGGCTCGCGGAGGCGCACCGGCTGGGGTTCACGCA
CGCGCTGGTGCCGGTGGATCCGGGCAAGGTGCCGGCGGGGATGAAGGTGACCGAGGTCGCTGACATGGGTGACGCGCTAC
GGGCGCTGCCGCGCGGGCGTTCGCGTGCCAAGGCCCCCGAGCGGGACCCGAACTGA

Domains

Predicted by InterProScan.

Subunit ChlI of Mg-chelatase (ChlI)

(373-432)

Rubredoxin metal binding domain (Zn_ribbon_LapB)

(16-43)

AAA domain (AAA_25)

(85-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radA/sms Bacillus subtilis subsp. subtilis str. 168

44.273

96.391

0.427
  radA Streptococcus pneumoniae Rx1

42.384

96.178

0.408
  radA Streptococcus pneumoniae D39

42.384

96.178

0.408
  radA Streptococcus pneumoniae R6

42.384

96.178

0.408
  radA Streptococcus pneumoniae TIGR4

42.384

96.178

0.408
  radA Streptococcus mitis SK321

44.235

90.234

0.399
  radA Streptococcus mitis NCTC 12261

44.235

90.234

0.399