Detailed information    

insolico Bioinformatically predicted

Overview

Name   rpoS   Type   Regulator
Locus tag   EES41_RS15890 Genome accession   NZ_CP033581
Coordinates   3629752..3630729 (-) Length   325 a.a.
NCBI ID   WP_123079009.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   regulation of chitinases (predicted from homology)   
Competence regulation

Genomic Context

Location: 3624752..3635729
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS15865 (EES41_15895) - 3624846..3625256 (+) 411 WP_123082492.1 rodlin -
  EES41_RS15870 (EES41_15900) - 3625358..3625999 (-) 642 WP_123079001.1 vitamin K epoxide reductase family protein -
  EES41_RS15875 (EES41_15905) - 3626192..3626977 (+) 786 WP_123079003.1 DUF6227 family protein -
  EES41_RS15880 (EES41_15910) - 3627104..3628507 (-) 1404 WP_284681870.1 MFS transporter -
  EES41_RS15885 (EES41_15915) - 3628726..3629694 (+) 969 WP_123079007.1 YafY family protein -
  EES41_RS15890 (EES41_15920) rpoS 3629752..3630729 (-) 978 WP_123079009.1 RNA polymerase sigma factor RpoD/SigA Regulator
  EES41_RS15895 (EES41_15925) - 3631275..3631925 (+) 651 WP_123079011.1 Uma2 family endonuclease -
  EES41_RS15900 (EES41_15930) - 3632034..3633572 (-) 1539 WP_123079013.1 MFS transporter -
  EES41_RS15905 (EES41_15935) - 3633656..3634318 (-) 663 WP_123079015.1 TetR/AcrR family transcriptional regulator -

Sequence

Protein


Download         Length: 325 a.a.        Molecular weight: 36430.11 Da        Isoelectric Point: 4.9619

>NTDB_id=283604 EES41_RS15890 WP_123079009.1 3629752..3630729(-) (rpoS) [Streptomyces sp. ADI95-16]
MATRAVARRQSTSSARAVGGEIADRDLVGMYLDEIARTPLLDAAKEVELSQIIEAGVYAQQILDGEAEREGEAPAREELE
ALAAEGERAKEVFIRSNLRLVVAVARRYPRSGLPLLDLIQEGNAGLVRAVEKFDYAKGFKFSTYATWWIRQAITRSIADQ
SRTIRLPVHLVEELGRIRRVQREFNREHGRDPEHAEIAAELDTTAKRVGDVLDWARDPVSLNMSVDDDGDTQFGDLLEDT
SAISPEQSVLSLLRSEELEDLLGKLDQRTASIIKMRYGIDDGRERTLTEVGKQHGLTRERIRQIEKHALLELKKMARDTG
FDAVA

Nucleotide


Download         Length: 978 bp        

>NTDB_id=283604 EES41_RS15890 WP_123079009.1 3629752..3630729(-) (rpoS) [Streptomyces sp. ADI95-16]
ATGGCAACCCGCGCCGTCGCCCGTCGTCAGTCCACCAGCAGCGCCCGCGCTGTGGGCGGGGAGATCGCCGACCGCGACCT
GGTCGGCATGTACCTGGACGAGATCGCGCGCACCCCGCTGCTCGACGCCGCCAAGGAAGTAGAGCTCTCCCAGATCATCG
AGGCGGGCGTGTACGCCCAGCAGATCCTCGACGGCGAGGCGGAGCGCGAGGGCGAGGCGCCCGCGCGCGAGGAGCTCGAA
GCGCTGGCCGCCGAGGGGGAGCGGGCCAAGGAAGTCTTCATCCGCTCCAACCTGCGCCTGGTCGTCGCGGTCGCCCGCCG
CTACCCGCGCAGTGGTCTGCCCCTGCTCGACCTGATCCAGGAGGGCAACGCGGGCCTGGTGCGGGCCGTCGAGAAGTTCG
ACTACGCCAAGGGCTTCAAGTTCTCCACGTACGCGACGTGGTGGATCCGCCAGGCCATCACCCGCTCCATCGCCGACCAG
TCCCGGACGATCCGCCTCCCCGTCCACCTGGTCGAGGAGCTCGGCCGGATCCGCCGGGTGCAGCGCGAGTTCAACCGCGA
GCACGGCCGCGACCCGGAGCACGCGGAGATCGCCGCCGAGCTGGACACCACGGCGAAGCGCGTGGGCGACGTACTGGACT
GGGCGCGCGACCCGGTCAGCCTGAACATGTCGGTCGACGACGACGGCGACACGCAGTTCGGTGACCTCCTGGAGGACACC
TCCGCGATCTCGCCGGAGCAGTCCGTCCTCTCGCTGCTGCGCAGCGAGGAGCTGGAGGACCTGCTGGGCAAGCTCGACCA
GCGCACGGCCTCGATCATCAAGATGCGGTACGGCATCGACGACGGCCGCGAGCGGACCCTCACGGAGGTCGGCAAGCAGC
ACGGCCTGACCCGCGAGCGGATCCGCCAGATCGAGAAGCACGCCCTGCTGGAGCTGAAGAAGATGGCCCGCGACACCGGC
TTCGACGCCGTGGCCTGA

Domains

Predicted by InterProScan.

Sigma-70 region 3 (Sigma70_r3)

(172-248)

Sigma-70 factor, region 1.2 (Sigma70_r1_2)

(26-59)

Sigma-70 region 2 (Sigma70_r2)

(93-162)

Sigma-70, region 4 (Sigma70_r4)

(261-314)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rpoS Vibrio cholerae O1 biovar El Tor strain E7946

39.667

92.308

0.366