Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   EES41_RS12865 Genome accession   NZ_CP033581
Coordinates   2940145..2941878 (+) Length   577 a.a.
NCBI ID   WP_123078178.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2935145..2946878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS12835 (EES41_12860) - 2936361..2937506 (+) 1146 WP_123078172.1 glutamate--cysteine ligase -
  EES41_RS12855 (EES41_12880) - 2938160..2938471 (+) 312 WP_123078174.1 YtxH domain-containing protein -
  EES41_RS12860 (EES41_12885) - 2938548..2939996 (+) 1449 WP_123078176.1 FGGY family carbohydrate kinase -
  EES41_RS12865 (EES41_12890) rcrP 2940145..2941878 (+) 1734 WP_123078178.1 ABC transporter ATP-binding protein Regulator
  EES41_RS12870 (EES41_12895) rcrQ 2941875..2943797 (+) 1923 WP_123078180.1 ABC transporter ATP-binding protein Regulator
  EES41_RS12875 (EES41_12900) - 2943893..2944981 (-) 1089 WP_123078182.1 RNA polymerase sigma factor -
  EES41_RS12880 (EES41_12905) - 2945187..2945894 (-) 708 WP_123078184.1 vancomycin high temperature exclusion protein -

Sequence

Protein


Download         Length: 577 a.a.        Molecular weight: 62481.50 Da        Isoelectric Point: 5.1710

>NTDB_id=283593 EES41_RS12865 WP_123078178.1 2940145..2941878(+) (rcrP) [Streptomyces sp. ADI95-16]
MLIRLLRTHLGPYRKPIALLVLLQLLQTSATLYLPTLNADIIDKGVVNGDTGYILRFGALMLGVSLVQLGCNIGAVYFGA
RTAAAVGRDVRAAVFDRVQSFSARELGHFGAPSLITRTTNDVQQVQMLVLMTFTLMVSAPIMCVGGIAMALSLDVRLSGV
LLAVVPVLGVSVGAIVFRTRPLFRQMQERLDTVNRVLREQITGNRVIRAFVRDEYEKDRFREANADLTGVSLAAGKLLAL
MFPTVIVVVNISSVAVIWFGAMRIDSGGMEIGQLTAFLAYLMQIVMAVMMATFMFMMVPRAEVCAERIQEVLDTESSVVP
PADPVTKLLRRGSLELRGADFRYPGAEAPVLRGVDLVARPGETTAVIGSTGSGKSTLLGLVPRLFDATGGEVLVDGEDVR
RLDPELLAKTVGMVPQKPYLFSGTVASNLRYGRPDASDEELWQALEVAQAKDFVSELEGGLDAPVTQGGTNVSGGQRQRL
AIARTLVQRPEIYLFDDSFSALDYATDAALRAALARETENATVVIVAQRVSTIRDADRIIVLDEGEVVGEGRHHELMAGN
ETYREIVLSQLTEAEAA

Nucleotide


Download         Length: 1734 bp        

>NTDB_id=283593 EES41_RS12865 WP_123078178.1 2940145..2941878(+) (rcrP) [Streptomyces sp. ADI95-16]
GTGCTCATACGACTTCTGCGGACCCATCTGGGTCCGTACCGGAAACCGATCGCCCTCCTGGTCCTGCTCCAGCTTCTGCA
GACCAGCGCGACCCTCTACCTCCCGACGCTGAACGCCGACATCATCGACAAGGGTGTGGTCAACGGCGACACCGGCTACA
TCCTGCGCTTCGGCGCTCTCATGCTCGGTGTCTCGCTCGTCCAGCTCGGCTGCAACATCGGCGCCGTCTACTTCGGCGCC
CGCACCGCGGCGGCCGTCGGCCGGGACGTCCGCGCCGCCGTCTTCGACCGGGTGCAGAGCTTCTCCGCCCGGGAGCTGGG
CCACTTCGGCGCCCCGTCGCTGATCACCCGTACGACGAACGACGTCCAACAGGTCCAGATGCTGGTCCTGATGACCTTCA
CCCTGATGGTCTCCGCGCCGATCATGTGCGTCGGCGGCATCGCCATGGCGCTCTCCCTCGACGTGCGGCTGTCGGGCGTG
CTGCTCGCGGTCGTGCCCGTGCTCGGCGTCTCGGTCGGCGCGATCGTCTTCAGGACGCGGCCGCTGTTCCGGCAGATGCA
GGAACGCCTGGACACCGTGAACCGGGTGCTGCGCGAGCAGATCACCGGCAACCGGGTGATCCGCGCCTTCGTCCGCGACG
AGTACGAGAAGGACCGCTTCCGGGAGGCCAACGCCGACCTCACGGGCGTCTCGCTGGCCGCCGGCAAGCTGCTGGCCCTG
ATGTTCCCCACCGTGATCGTGGTCGTGAACATCTCCAGCGTCGCCGTCATCTGGTTCGGCGCGATGCGCATCGACAGCGG
CGGCATGGAGATCGGCCAGCTGACGGCCTTCCTCGCGTACCTGATGCAGATCGTGATGGCCGTGATGATGGCCACCTTCA
TGTTCATGATGGTGCCGCGCGCCGAGGTCTGCGCCGAGCGCATCCAGGAGGTCCTGGACACCGAGTCCAGCGTGGTCCCG
CCCGCCGACCCGGTCACGAAGCTCCTGCGCCGAGGCAGCCTGGAGCTGCGCGGCGCCGACTTCCGTTACCCGGGCGCCGA
GGCCCCGGTGCTGCGCGGGGTGGACCTGGTGGCCCGCCCCGGCGAGACCACCGCGGTGATCGGCTCCACCGGCAGCGGCA
AGTCCACGCTGCTCGGCCTGGTGCCCCGGCTGTTCGACGCGACCGGCGGCGAGGTGCTGGTCGACGGGGAGGACGTACGC
CGCCTGGACCCGGAGCTGCTGGCGAAGACGGTCGGCATGGTCCCGCAGAAGCCGTACCTGTTCTCCGGAACCGTCGCGTC
CAACCTGCGCTACGGGCGTCCGGACGCCTCGGACGAGGAGCTGTGGCAGGCGCTGGAGGTGGCGCAGGCGAAGGACTTCG
TGTCCGAGCTGGAGGGCGGCCTCGACGCACCCGTCACCCAGGGCGGAACCAATGTCTCCGGCGGCCAGCGCCAGCGGCTG
GCGATCGCCCGCACGCTCGTGCAGCGCCCGGAGATCTACCTCTTCGACGACTCCTTCTCGGCCCTGGACTACGCGACGGA
CGCGGCGCTGCGCGCGGCGCTGGCCCGCGAGACCGAGAACGCGACGGTGGTCATCGTCGCGCAGCGGGTCTCCACGATCC
GTGACGCCGACCGGATCATCGTCCTGGACGAGGGCGAGGTCGTGGGCGAGGGGCGCCATCACGAGCTGATGGCCGGCAAT
GAGACCTACCGGGAGATCGTGCTCTCCCAGCTGACGGAGGCGGAGGCCGCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(352-498)

ABC transporter transmembrane region (ABC_membrane)

(19-288)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

40.32

97.574

0.393

Multiple sequence alignment