Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrQ   Type   Regulator
Locus tag   EES41_RS12870 Genome accession   NZ_CP033581
Coordinates   2941875..2943797 (+) Length   640 a.a.
NCBI ID   WP_123078180.1    Uniprot ID   -
Organism   Streptomyces sp. ADI95-16     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 2936875..2948797
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EES41_RS12855 (EES41_12880) - 2938160..2938471 (+) 312 WP_123078174.1 YtxH domain-containing protein -
  EES41_RS12860 (EES41_12885) - 2938548..2939996 (+) 1449 WP_123078176.1 FGGY family carbohydrate kinase -
  EES41_RS12865 (EES41_12890) rcrP 2940145..2941878 (+) 1734 WP_123078178.1 ABC transporter ATP-binding protein Regulator
  EES41_RS12870 (EES41_12895) rcrQ 2941875..2943797 (+) 1923 WP_123078180.1 ABC transporter ATP-binding protein Regulator
  EES41_RS12875 (EES41_12900) - 2943893..2944981 (-) 1089 WP_123078182.1 RNA polymerase sigma factor -
  EES41_RS12880 (EES41_12905) - 2945187..2945894 (-) 708 WP_123078184.1 vancomycin high temperature exclusion protein -
  EES41_RS12885 (EES41_12910) - 2946255..2946974 (+) 720 WP_123078186.1 sirohydrochlorin chelatase -
  EES41_RS12890 (EES41_12915) - 2947032..2948369 (+) 1338 WP_123078188.1 deoxyguanosinetriphosphate triphosphohydrolase -

Sequence

Protein


Download         Length: 640 a.a.        Molecular weight: 69192.73 Da        Isoelectric Point: 5.5765

>NTDB_id=283594 EES41_RS12870 WP_123078180.1 2941875..2943797(+) (rcrQ) [Streptomyces sp. ADI95-16]
MSGPGGRMMMGPNERSLDFKGSGQRLLKQLTQDRAKLWGMVVAVVGSVGCAVVGPKILGQATDLVFAGIVGRQMPAGVTK
QEALDKLRADGHGGMADMLSGTDFTPGRGIDFGAVGVVAIWALVVFTLAGLLMLVATRLSNHVMNGTVYRMREELQGKLS
RLPLSYFDQQKRGEVLSRATNDIDNIGQTLQQTMGQLLNSLLTIVGVLAMMFWISPLLALVALVTVPVSVFVAAKIGKKS
QPQFVAQWKTTGTLNAHIEEMYSGHNLVKVFGRQKESAAVFAEQNEELYRASFKAQLVSGIMQPVMFFISNINYVLIAVV
GGLRVASGTLSIGDVQAFIQYSRQFSMPLTQVASMANLVQSGVASAERVYELLDAREQEPDVDVPERPERLRGQVTLDKV
AFRYEPDKPLIENLSLTVEPGQTVAIVGPTGAGKTTLVNLLMRFYEVTGGRIALDGVDIAKMTREELRTGIGMVLQDTWL
FGGTIAENIAYGASREVTRAEIEEAARAAHADRFVRTLPDGYDTVLDDEGAGVSAGEKQLITIARAFLSDPVILVLDEAT
SSVDTRTEVLIQKAMARLAHGRTSFVIAHRLSTIRDADVILVMENGSIVEQGSHEELLAADGAYARLYTAQFAQAVAEVD

Nucleotide


Download         Length: 1923 bp        

>NTDB_id=283594 EES41_RS12870 WP_123078180.1 2941875..2943797(+) (rcrQ) [Streptomyces sp. ADI95-16]
ATGAGCGGGCCCGGAGGACGGATGATGATGGGGCCGAACGAGCGGTCCCTGGACTTCAAGGGTTCGGGCCAACGGCTGCT
GAAGCAGCTCACGCAGGACCGGGCCAAGCTGTGGGGCATGGTCGTGGCGGTCGTCGGCAGCGTCGGCTGCGCGGTCGTCG
GGCCGAAGATCCTCGGGCAGGCGACCGACCTGGTGTTCGCGGGGATCGTGGGGCGGCAGATGCCGGCCGGCGTCACCAAG
CAGGAGGCGCTGGACAAGCTGCGCGCGGACGGTCACGGCGGGATGGCGGACATGCTGTCCGGCACCGACTTCACCCCGGG
CCGGGGCATCGACTTCGGGGCCGTCGGGGTCGTGGCGATCTGGGCGCTGGTGGTCTTCACGCTGGCGGGTCTGCTGATGC
TGGTGGCGACGCGGCTGTCGAACCACGTCATGAACGGCACCGTGTACCGGATGCGCGAGGAGCTCCAGGGGAAGCTGTCG
CGGCTGCCGCTGTCGTACTTCGACCAGCAAAAGCGGGGCGAGGTCCTGAGCCGGGCCACGAACGACATCGACAACATCGG
GCAGACGCTCCAGCAGACGATGGGTCAGCTGCTGAACTCGCTGCTGACGATCGTCGGCGTGCTGGCGATGATGTTCTGGA
TCTCGCCGCTGCTGGCGCTGGTCGCGCTGGTGACGGTGCCGGTGTCGGTGTTCGTCGCGGCGAAGATCGGCAAGAAGTCG
CAGCCGCAGTTCGTGGCGCAGTGGAAGACCACCGGCACGCTGAACGCGCACATCGAGGAGATGTACTCGGGCCACAACCT
GGTCAAGGTCTTCGGCCGGCAGAAGGAGTCCGCGGCGGTCTTCGCCGAGCAGAACGAGGAGCTGTACCGGGCCTCGTTCA
AGGCGCAGCTGGTCAGCGGGATAATGCAGCCGGTGATGTTCTTCATCTCGAACATCAACTACGTGCTGATCGCGGTGGTC
GGCGGTCTGCGGGTGGCCTCGGGCACCCTGTCGATCGGTGACGTGCAGGCCTTCATCCAGTACTCGCGCCAGTTCTCGAT
GCCGCTGACGCAGGTCGCCTCGATGGCGAACCTGGTGCAGTCCGGCGTCGCCTCGGCGGAGCGGGTGTACGAGCTGCTGG
ACGCGCGGGAGCAGGAGCCGGACGTCGACGTCCCGGAGCGCCCGGAGCGGCTGCGCGGGCAGGTCACCCTCGACAAGGTG
GCGTTCCGCTACGAGCCGGACAAGCCGCTGATCGAGAACCTGTCGCTGACGGTCGAGCCGGGCCAGACGGTCGCGATCGT
CGGCCCGACGGGCGCCGGCAAGACCACGCTCGTCAACCTCTTGATGCGGTTCTACGAGGTCACGGGCGGCCGGATCGCCC
TGGACGGGGTGGACATCGCGAAGATGACCCGCGAGGAACTGCGCACGGGCATCGGCATGGTGCTCCAGGACACCTGGCTG
TTCGGCGGCACGATCGCGGAGAACATCGCCTACGGGGCGTCGCGCGAGGTCACGCGCGCCGAGATCGAGGAGGCGGCGCG
CGCCGCGCACGCCGACCGGTTCGTCCGCACCCTGCCGGACGGTTACGACACCGTGCTGGACGACGAGGGCGCGGGCGTCA
GCGCCGGCGAGAAGCAGCTGATCACCATCGCCCGGGCGTTCCTGTCGGACCCGGTGATCCTGGTGCTCGACGAGGCGACG
AGTTCGGTGGACACCCGTACCGAGGTGCTGATCCAGAAGGCGATGGCGCGCCTCGCGCACGGCCGTACGTCGTTCGTGAT
CGCGCACCGGCTGTCCACGATCCGCGACGCGGACGTGATCCTGGTGATGGAGAACGGCTCGATCGTGGAGCAGGGCTCGC
ACGAGGAGCTGCTGGCCGCGGACGGCGCCTACGCGCGCCTGTACACGGCGCAGTTCGCGCAGGCGGTGGCCGAGGTCGAC
TAG

Domains

Predicted by InterProScan.

ABC transporter transmembrane region (ABC_membrane)

(55-349)

ABC transporter (ABC_tran)

(412-561)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrQ Streptococcus mutans UA159

40.532

94.063

0.381