Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EEL44_RS17695 Genome accession   NZ_CP033515
Coordinates   2407030..2407527 (-) Length   165 a.a.
NCBI ID   WP_000797297.1    Uniprot ID   G9IDC2
Organism   Vibrio cholerae strain E4     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2402030..2412527
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EEL44_RS17660 (EEL44_17660) - 2402411..2402821 (+) 411 WP_000592337.1 helix-turn-helix transcriptional regulator -
  EEL44_RS17665 (EEL44_17665) - 2402958..2403254 (+) 297 WP_001919795.1 DUF1801 domain-containing protein -
  EEL44_RS17670 (EEL44_17670) - 2403354..2404055 (+) 702 WP_001901434.1 helix-turn-helix transcriptional regulator -
  EEL44_RS17675 (EEL44_17675) - 2404052..2404456 (-) 405 WP_000023761.1 VOC family protein -
  EEL44_RS17680 (EEL44_17680) - 2404728..2405435 (-) 708 WP_000989526.1 hypothetical protein -
  EEL44_RS17685 (EEL44_17685) - 2405525..2406598 (-) 1074 WP_001207590.1 primase-helicase zinc-binding domain-containing protein -
  EEL44_RS17690 (EEL44_17690) - 2406689..2407030 (-) 342 WP_001081787.1 hypothetical protein -
  EEL44_RS17695 (EEL44_17695) radC 2407030..2407527 (-) 498 WP_000797297.1 DNA repair protein RadC Machinery gene
  EEL44_RS17700 (EEL44_17700) - 2407612..2409267 (-) 1656 WP_001016320.1 nitric oxide reductase activation protein NorD -
  EEL44_RS17705 (EEL44_17705) - 2409337..2409777 (-) 441 WP_001192023.1 hypothetical protein -
  EEL44_RS17710 (EEL44_17710) - 2409839..2410792 (-) 954 WP_000027441.1 DUF3150 domain-containing protein -
  EEL44_RS17715 (EEL44_17715) - 2410891..2411658 (-) 768 WP_000970189.1 hypothetical protein -

Sequence

Protein


Download         Length: 165 a.a.        Molecular weight: 18510.16 Da        Isoelectric Point: 6.6092

>NTDB_id=283548 EEL44_RS17695 WP_000797297.1 2407030..2407527(-) (radC) [Vibrio cholerae strain E4]
MKNRKFLAGEDAGTYIVPEQVTEADILDLALKLARGRLSKGRKIEQPSSAFSYLQTLMHEYEHEVFGVLFLDTKHRVIRF
EELFKGTLDAASVYPREVTKRALELNAAAVILVHNHPSGDPEPSEADKRITHRLRDALSLVDIRTLDHVVVASEGCVSLA
ERGYL

Nucleotide


Download         Length: 498 bp        

>NTDB_id=283548 EEL44_RS17695 WP_000797297.1 2407030..2407527(-) (radC) [Vibrio cholerae strain E4]
ATGAAAAACAGAAAGTTCTTAGCTGGCGAAGATGCCGGTACTTATATCGTTCCTGAGCAAGTGACTGAAGCGGATATCTT
AGATCTGGCGCTTAAGCTTGCCCGTGGTCGATTAAGTAAAGGTCGCAAAATTGAACAGCCATCGTCGGCGTTCTCATACC
TGCAAACACTGATGCACGAGTATGAGCACGAGGTTTTTGGTGTGCTGTTTCTTGATACAAAGCATCGCGTCATTCGATTT
GAAGAGCTGTTCAAAGGCACTTTAGATGCGGCGAGCGTGTATCCAAGGGAAGTAACAAAACGAGCGCTAGAACTTAATGC
GGCAGCAGTGATACTGGTTCATAACCATCCATCGGGTGATCCTGAACCCAGTGAAGCTGATAAACGCATTACTCATCGAC
TTCGTGACGCCTTGTCACTTGTTGATATTCGAACGCTTGACCATGTCGTGGTCGCATCCGAGGGCTGCGTTTCGCTTGCC
GAACGCGGTTATCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G9IDC2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

50

73.939

0.37