Detailed information    

insolico Bioinformatically predicted

Overview

Name   rapC   Type   Regulator
Locus tag   C7M30_RS21345 Genome accession   NZ_CP028218
Coordinates   4078208..4079338 (-) Length   376 a.a.
NCBI ID   WP_160244964.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   inhibit the DNA-binding function of ComA (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
Prophage 4074954..4087978 4078208..4079338 within 0


Gene organization within MGE regions


Location: 4074954..4087978
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS21320 (C7M30_04224) aoxN 4074954..4076390 (-) 1437 WP_139020905.1 flavin monoamine oxidase family protein -
  C7M30_RS21325 (C7M30_04225) yobM 4076518..4077030 (+) 513 WP_139020903.1 SMI1/KNR4 family protein -
  C7M30_RS21330 - 4077176..4077331 (+) 156 Protein_4182 T7SS effector LXG polymorphic toxin -
  C7M30_RS22095 - 4077329..4077498 (+) 170 Protein_4183 hypothetical protein -
  C7M30_RS22100 (C7M30_04227) - 4077721..4077921 (+) 201 WP_021481449.1 hypothetical protein -
  C7M30_RS21340 (C7M30_04228) - 4078075..4078218 (-) 144 WP_021481448.1 hypothetical protein -
  C7M30_RS21345 (C7M30_04229) rapC 4078208..4079338 (-) 1131 WP_160244964.1 tetratricopeptide repeat protein Regulator
  C7M30_RS22105 - 4079423..4079545 (-) 123 WP_250620812.1 phage holin -
  C7M30_RS21355 (C7M30_04230) - 4080417..4080791 (-) 375 WP_021481445.1 YoqO family protein -
  C7M30_RS21360 - 4081044..4081338 (-) 295 Protein_4189 SOS response-associated peptidase family protein -
  C7M30_RS21365 (C7M30_04232) - 4081519..4081884 (-) 366 WP_021481443.1 hypothetical protein -
  C7M30_RS21370 (C7M30_04233) - 4082398..4082952 (+) 555 WP_101502347.1 hypothetical protein -
  C7M30_RS21785 (C7M30_04234) - 4083287..4083460 (+) 174 WP_164971710.1 hypothetical protein -
  C7M30_RS21375 (C7M30_04235) - 4083544..4083927 (+) 384 WP_101502483.1 UPF0715 family protein -
  C7M30_RS21380 (C7M30_04236) - 4084019..4084456 (+) 438 WP_101502346.1 hypothetical protein -
  C7M30_RS21385 (C7M30_04237) - 4084549..4084775 (+) 227 Protein_4195 helix-turn-helix transcriptional regulator -
  C7M30_RS21390 (C7M30_04238) - 4084949..4085590 (+) 642 WP_085187557.1 DUF3885 domain-containing protein -
  C7M30_RS21395 (C7M30_04239) - 4085709..4086062 (+) 354 WP_072176398.1 hypothetical protein -
  C7M30_RS21400 (C7M30_04240) - 4086100..4086321 (+) 222 WP_116315615.1 hypothetical protein -
  C7M30_RS21405 (C7M30_04241) - 4086366..4086758 (+) 393 WP_072176394.1 UPF0715 family protein -
  C7M30_RS21410 (C7M30_04242) - 4086768..4086998 (-) 231 WP_043857649.1 membrane protein -
  C7M30_RS21415 - 4087110..4087289 (-) 180 WP_003231000.1 hypothetical protein -
  C7M30_RS21420 (C7M30_04243) - 4087359..4087610 (+) 252 WP_072176392.1 hypothetical protein -
  C7M30_RS21425 (C7M30_04244) - 4087614..4087836 (+) 223 Protein_4203 hypothetical protein -
  C7M30_RS21430 (C7M30_04245) - 4087847..4087978 (+) 132 WP_072176391.1 hypothetical protein -

Sequence

Protein


Download         Length: 376 a.a.        Molecular weight: 44359.14 Da        Isoelectric Point: 5.8915

>NTDB_id=283470 C7M30_RS21345 WP_160244964.1 4078208..4079338(-) (rapC) [Bacillus subtilis strain SRCM102756]
MEQLIPSSTVGVKINEWYKYIRMFAVPDAEILKAEVEEEIKHMKEDQDLLLYYSLMCFRHQLMLDYLEPKSLNEERPKIS
DLLEKIESSQTKLKGVLEYYCNFFRGMYELDKKDYIKAIRSYKIAEKKLALVTDEIERAEFYFKMAEVYYHMKQTHVSMH
YAEAALNIYKDQKTYTVRRIQCAFVVAGNFDDLESHEKAVPHLQRALKDSKAINKHKLIGASLYNLGNCYYKMKEYDKAA
EYIEQAVSLYENDKSDLLPHTLFTLTQIYFKMKNIEKAFILYKKGIEKAQAINDDVLVAEFNYLKALYIDSIDKRTVFRT
FSVLKDNVMYPDLEELALDTANYCKEIGQFENSTTFFDVMVDARIQIQRGECLYEI

Nucleotide


Download         Length: 1131 bp        

>NTDB_id=283470 C7M30_RS21345 WP_160244964.1 4078208..4079338(-) (rapC) [Bacillus subtilis strain SRCM102756]
ATGGAGCAATTAATTCCGTCATCCACGGTTGGAGTTAAAATCAATGAGTGGTATAAATACATACGGATGTTCGCCGTTCC
AGATGCTGAGATATTAAAAGCAGAAGTTGAAGAAGAAATAAAACATATGAAGGAAGATCAAGACTTATTGTTGTATTATT
CTCTAATGTGTTTTCGTCATCAGCTAATGCTGGATTACCTTGAACCTAAGTCATTGAATGAAGAACGCCCTAAAATTTCA
GACTTATTAGAAAAGATCGAAAGCAGTCAAACAAAGCTTAAAGGTGTCCTGGAATATTACTGCAATTTCTTTAGAGGAAT
GTACGAACTTGATAAGAAGGATTATATAAAAGCAATAAGGTCATATAAAATTGCTGAGAAAAAGCTCGCTTTAGTAACAG
ACGAAATTGAACGAGCTGAGTTTTATTTCAAAATGGCTGAAGTGTATTATCACATGAAACAAACCCATGTATCAATGCAC
TATGCTGAAGCAGCACTTAACATTTATAAAGACCAAAAAACTTATACTGTTCGCCGAATACAATGTGCATTTGTTGTAGC
AGGCAACTTTGATGATCTGGAAAGTCATGAAAAAGCAGTTCCGCATCTTCAAAGAGCCCTAAAAGATTCTAAAGCTATAA
ACAAGCACAAACTAATTGGGGCATCATTATATAATTTGGGAAATTGTTATTATAAGATGAAAGAGTATGACAAAGCTGCT
GAATATATTGAACAAGCAGTTTCACTGTACGAAAACGATAAAAGTGATCTTCTCCCTCACACGTTATTTACACTTACACA
AATTTACTTTAAAATGAAGAATATTGAAAAAGCCTTTATACTTTATAAAAAAGGAATCGAGAAAGCACAAGCCATTAACG
ATGATGTCTTAGTTGCTGAGTTTAATTACTTAAAGGCTTTATATATCGACTCTATAGATAAACGCACAGTTTTCCGAACT
TTTTCTGTACTTAAAGATAATGTAATGTATCCAGATTTAGAGGAATTAGCACTCGACACGGCTAATTATTGTAAGGAGAT
AGGGCAATTTGAAAACTCAACCACCTTTTTTGACGTCATGGTGGATGCCCGAATCCAAATACAAAGAGGAGAGTGTTTAT
ATGAAATTTAA

Domains

Predicted by InterproScan.

response regulator aspartate phosphatase H, N terminal (RapH_N)

(5-65)

Tetratricopeptide repeat (TPR_12)

(221-287)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rapC Bacillus subtilis subsp. subtilis str. 168

50.798

100

0.508
  rapF Bacillus subtilis subsp. subtilis str. 168

45.383

100

0.457

Multiple sequence alignment