Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M30_RS20370 Genome accession   NZ_CP028218
Coordinates   3922810..3923430 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3917810..3928430
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS20350 (C7M30_04039) dnaD 3918092..3918790 (+) 699 WP_160244924.1 DNA replication protein DnaD -
  C7M30_RS20355 (C7M30_04040) nth 3918809..3919468 (+) 660 WP_160244925.1 endonuclease III -
  C7M30_RS20360 (C7M30_04041) ypoC 3919465..3919959 (+) 495 WP_160244926.1 YpoC family protein -
  C7M30_RS20365 (C7M30_04042) ponA 3920035..3922788 (-) 2754 WP_160244927.1 PBP1A family penicillin-binding protein -
  C7M30_RS20370 (C7M30_04043) recU 3922810..3923430 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C7M30_RS20375 (C7M30_04044) yppC 3923471..3924433 (+) 963 WP_160244928.1 DUF2515 domain-containing protein -
  C7M30_RS20380 (C7M30_04045) sspM 3924458..3924562 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C7M30_RS20385 (C7M30_04046) yppD 3924761..3925006 (+) 246 WP_021481526.1 DUF5446 family protein -
  C7M30_RS20390 (C7M30_04047) yppE 3925052..3925423 (+) 372 WP_003246080.1 YppE family protein -
  C7M30_RS20395 (C7M30_04048) yppF 3925462..3925650 (-) 189 WP_003230690.1 YppF family protein -
  C7M30_RS20400 (C7M30_04049) sppG 3925838..3926215 (+) 378 WP_014477159.1 YppG family protein -
  C7M30_RS20405 (C7M30_04050) ypqA 3926236..3926655 (-) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  C7M30_RS20410 (C7M30_04051) ptsA 3926793..3927299 (+) 507 WP_015483368.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=283469 C7M30_RS20370 WP_004399067.1 3922810..3923430(-) (recU) [Bacillus subtilis strain SRCM102756]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=283469 C7M30_RS20370 WP_004399067.1 3922810..3923430(-) (recU) [Bacillus subtilis strain SRCM102756]
GTGATTCGGTATCCTAACGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGCAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment