Detailed information    

insolico Bioinformatically predicted

Overview

Name   spo0A   Type   Regulator
Locus tag   C7M30_RS19395 Genome accession   NZ_CP028218
Coordinates   3746847..3747650 (+) Length   267 a.a.
NCBI ID   WP_003226427.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   activation and repression of comK; repression of rok; repression of abrB (predicted from homology)   
Competence regulation

Genomic Context

Location: 3741847..3752650
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS19375 (C7M30_03844) yqxC 3741957..3742802 (+) 846 WP_003230264.1 TlyA family RNA methyltransferase -
  C7M30_RS19380 (C7M30_03845) argR 3742900..3743349 (+) 450 WP_015384067.1 arginine repressor ArgR -
  C7M30_RS19385 (C7M30_03846) recN 3743386..3745116 (+) 1731 WP_038829742.1 DNA repair protein RecN Machinery gene
  C7M30_RS19390 (C7M30_03847) spoIVB 3745291..3746571 (+) 1281 WP_032726122.1 SpoIVB peptidase -
  C7M30_RS19395 (C7M30_03848) spo0A 3746847..3747650 (+) 804 WP_003226427.1 sporulation transcription factor Spo0A Regulator
  C7M30_RS19400 (C7M30_03850) yqiG 3748115..3749233 (-) 1119 WP_160244882.1 NADH-dependent flavin oxidoreductase -
  C7M30_RS19405 - 3749306..3749458 (-) 153 WP_014480226.1 hypothetical protein -
  C7M30_RS19410 (C7M30_03851) - 3749766..3750062 (+) 297 WP_014480225.1 hypothetical protein -
  C7M30_RS19415 (C7M30_03852) yqiI 3750082..3750702 (+) 621 WP_077671425.1 N-acetylmuramoyl-L-alanine amidase -
  C7M30_RS19420 (C7M30_03853) glpQB 3750781..3751512 (+) 732 WP_069703866.1 glycerophosphodiester phosphodiesterase -

Sequence

Protein


Download         Length: 267 a.a.        Molecular weight: 29691.19 Da        Isoelectric Point: 6.3913

>NTDB_id=283468 C7M30_RS19395 WP_003226427.1 3746847..3747650(+) (spo0A) [Bacillus subtilis strain SRCM102756]
MEKIKVCVADDNRELVSLLSEYIEGQEDMEVIGVAYNGQECLSLFKEKDPDVLVLDIIMPHLDGLAVLERLRESDLKKQP
NVIMLTAFGQEDVTKKAVDLGASYFILKPFDMENLVGHIRQVSGNASSVTHRAPSSQSSIIRSSQPEPKKKNLDASITSI
IHEIGVPAHIKGYLYLREAISMVYNDIELLGSITKVLYPDIAKKFNTTASRVERAIRHAIEVAWSRGNIDSISSLFGYTV
SMTKAKPTNSEFIAMVADKLRLEHKAS

Nucleotide


Download         Length: 804 bp        

>NTDB_id=283468 C7M30_RS19395 WP_003226427.1 3746847..3747650(+) (spo0A) [Bacillus subtilis strain SRCM102756]
GTGGAGAAAATTAAAGTTTGTGTTGCTGATGATAATCGAGAGCTGGTAAGCCTGTTAAGTGAATATATAGAAGGACAGGA
AGACATGGAAGTGATCGGCGTTGCTTATAACGGACAGGAATGCCTGTCGCTGTTTAAAGAAAAAGATCCCGATGTGCTCG
TATTAGATATTATTATGCCGCATTTAGACGGACTTGCGGTTTTAGAGAGGCTGAGGGAATCAGATCTGAAAAAACAGCCG
AATGTCATTATGCTGACAGCCTTTGGACAGGAAGATGTCACGAAAAAGGCCGTCGATTTAGGCGCGTCCTACTTTATTCT
CAAACCGTTTGATATGGAAAACCTTGTCGGTCATATCCGCCAGGTCAGCGGAAATGCCAGCAGTGTGACGCATCGTGCGC
CATCATCGCAAAGCAGTATTATACGCAGCAGCCAGCCTGAACCAAAGAAGAAAAATCTCGACGCGAGCATCACAAGCATT
ATCCATGAAATCGGCGTCCCAGCCCATATTAAAGGTTATCTCTATCTGCGCGAAGCAATCTCAATGGTATACAATGACAT
CGAATTGCTCGGCAGCATTACAAAAGTCCTCTATCCGGACATCGCCAAAAAATTCAACACAACCGCAAGCCGTGTAGAAA
GAGCGATCCGCCATGCAATTGAAGTGGCATGGAGCAGAGGAAACATTGATTCCATTTCCTCGTTGTTTGGTTATACTGTC
AGCATGACAAAAGCTAAACCGACAAATTCGGAATTCATTGCAATGGTTGCGGATAAGCTGAGATTAGAACATAAGGCTTC
TTAA

Domains

Predicted by InterproScan.

Sporulation initiation factor Spo0A C terminal (Spo0A_C)

(157-260)

Response regulator receiver domain (Response_reg)

(6-119)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  spo0A Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment