Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGC   Type   Machinery gene
Locus tag   C7M30_RS19150 Genome accession   NZ_CP028218
Coordinates   3707704..3708000 (+) Length   98 a.a.
NCBI ID   WP_014477332.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3702704..3713000
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS19125 (C7M30_03794) yqhB 3702762..3704090 (-) 1329 WP_021480026.1 hemolysin family protein -
  C7M30_RS19130 (C7M30_03795) corA 3704233..3705186 (+) 954 WP_015483432.1 magnesium transporter CorA -
  C7M30_RS19135 (C7M30_03796) - 3705188..3705385 (+) 198 WP_160244870.1 CBS domain-containing protein -
  C7M30_RS19140 (C7M30_03797) comGA 3705596..3706666 (+) 1071 WP_070547533.1 competence protein ComGA Machinery gene
  C7M30_RS19145 (C7M30_03798) comGB 3706653..3707690 (+) 1038 WP_160244871.1 comG operon protein ComGB Machinery gene
  C7M30_RS19150 (C7M30_03799) comGC 3707704..3708000 (+) 297 WP_014477332.1 comG operon protein ComGC Machinery gene
  C7M30_RS19155 (C7M30_03800) comGD 3707990..3708421 (+) 432 WP_160244872.1 comG operon protein ComGD Machinery gene
  C7M30_RS19160 (C7M30_03801) comGE 3708405..3708752 (+) 348 WP_021480020.1 ComG operon protein 5 Machinery gene
  C7M30_RS19165 comGF 3708778..3709161 (+) 384 WP_076458111.1 ComG operon protein ComGF Machinery gene
  C7M30_RS19170 (C7M30_03803) comGG 3709162..3709536 (+) 375 WP_021480019.1 ComG operon protein ComGG Machinery gene
  C7M30_RS19175 (C7M30_03804) spoIITA 3709608..3709787 (+) 180 WP_014480252.1 YqzE family protein -
  C7M30_RS19180 (C7M30_03805) yqzG 3709829..3710155 (-) 327 WP_160244873.1 YqzG/YhdC family protein -
  C7M30_RS19185 (C7M30_03806) tapA 3710427..3711188 (+) 762 WP_160244874.1 amyloid fiber anchoring/assembly protein TapA -
  C7M30_RS19190 (C7M30_03807) sipW 3711172..3711744 (+) 573 WP_160245036.1 signal peptidase I SipW -
  C7M30_RS19195 (C7M30_03808) tasA 3711808..3712593 (+) 786 WP_014477324.1 biofilm matrix protein TasA -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 10830.69 Da        Isoelectric Point: 6.4730

>NTDB_id=283460 C7M30_RS19150 WP_014477332.1 3707704..3708000(+) (comGC) [Bacillus subtilis strain SRCM102756]
MNEKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELDHEGQTPSLADLQSEGYVKKDAV
CPNGKHIIITGGEVKVEH

Nucleotide


Download         Length: 297 bp        

>NTDB_id=283460 C7M30_RS19150 WP_014477332.1 3707704..3708000(+) (comGC) [Bacillus subtilis strain SRCM102756]
ATGAATGAGAAAGGATTTACACTTGTTGAAATGTTAATTGTGCTCTTTATTATTTCGATCTTGCTTTTAATTACGATACC
GAACGTCACGAAACATAATCAAACCATTCAAAAAAAGGGCTGTGAAGGCTTGCAAAACATGGTTAAGGCACAAATGACTG
CATTTGAGCTTGATCATGAAGGGCAAACTCCGAGCCTTGCCGATTTACAGTCAGAGGGCTATGTGAAAAAGGATGCTGTC
TGTCCAAATGGGAAGCACATTATCATCACCGGCGGAGAAGTTAAGGTTGAACATTAA

Domains

Predicted by InterproScan.

Prokaryotic N-terminal methylation motif (N_methyl)

(2-25)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGC Bacillus subtilis subsp. subtilis str. 168

98.98

100

0.99
  comGC Staphylococcus aureus MW2

41.304

93.878

0.388
  comGC Staphylococcus aureus N315

41.304

93.878

0.388
  comYC Streptococcus suis isolate S10

49.333

76.531

0.378

Multiple sequence alignment