Detailed information NTG0283460

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: D8668_RS23825
• Genome accession: NZ_CP033439
• Coordinates: 5077370..5078374 (-)
• Length: 334 a.a.
• NCBI ID: WP_003113871.1
• Uniprot ID: A0A0H2ZEU1
• Organism: Pseudomonas aeruginosa strain SP4528
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 5072370..5083374

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
D8668_RS23805 (D8668_23805)	-	5072853..5073860 (+)	1008	WP_003098486.1	TolB family protein	-
D8668_RS23815 (D8668_23815)	mutS	5073986..5076553 (+)	2568	WP_003113873.1	DNA mismatch repair protein MutS	-
D8668_RS23820 (D8668_23820)	fdxA	5076620..5076943 (+)	324	WP_003092272.1	ferredoxin FdxA	-
D8668_RS23825 (D8668_23825)	rpoS	5077370..5078374 (-)	1005	WP_003113871.1	RNA polymerase sigma factor RpoS	Regulator
D8668_RS23830 (D8668_23830)	-	5078479..5079372 (-)	894	WP_033991080.1	peptidoglycan DD-metalloendopeptidase family protein	-
D8668_RS23835 (D8668_23835)	-	5079418..5080053 (-)	636	WP_003098558.1	protein-L-isoaspartate(D-aspartate) O-methyltransferase	-
D8668_RS23840 (D8668_23840)	surE	5080086..5080835 (-)	750	WP_003092341.1	5'/3'-nucleotidase SurE	-
D8668_RS23845 (D8668_23845)	truD	5080823..5081890 (-)	1068	WP_003092343.1	tRNA pseudouridine(13) synthase TruD	-
D8668_RS23850 (D8668_23850)	ispF	5081887..5082360 (-)	474	WP_003092346.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
D8668_RS23855 (D8668_23855)	fghA	5082431..5083282 (-)	852	WP_003092349.1	S-formylglutathione hydrolase	-

Sequence

Protein

• Length: 334 a.a.
• Molecular weight: 38235.38 Da
• Isoelectric Point: 5.0478

>NTDB_id=283460 D8668_RS23825 WP_003113871.1 5077370..5078374(-) (rpoS) [Pseudomonas aeruginosa strain SP4528]
MALKKEGPEFDHDDEVLLLEPGIMLDESSADEQPSPRATPKATTSFSSKQHKHIDYTRALDATQLYLNEIGFSPLLTPEE
EVHFARLAQKGDPAGRKRMIESNLRLVVKIARRYVNRGLSLLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIE
RAIMNQTRTIRLPIHVVKELNVYLRAARELTHKLDHEPSPEEIANLLEKPVAEVKRMLGLNERVTSVDVSLGPDSDKTLL
DTLTDDRPTDPCELLQDDDLSESIDQWLTELTDKQREVVIRRFGLRGHESSTLEEVGQEIGLTRERVRQIQVEALKRLRE
ILEKNGLSSDALFQ

Nucleotide

• Length: 1005 bp

>NTDB_id=283460 D8668_RS23825 WP_003113871.1 5077370..5078374(-) (rpoS) [Pseudomonas aeruginosa strain SP4528]
ATGGCACTCAAAAAAGAAGGGCCGGAGTTTGACCACGATGATGAAGTGCTCCTCCTGGAGCCCGGCATCATGCTGGACGA
GTCGTCTGCCGACGAGCAGCCTTCTCCCCGGGCAACTCCAAAAGCCACCACTTCCTTCTCTTCCAAACAACACAAGCACA
TCGACTACACGCGCGCGTTGGACGCAACGCAGCTGTATCTCAACGAAATCGGTTTCTCGCCCCTGTTGACGCCCGAAGAG
GAAGTCCACTTCGCTCGTCTGGCGCAGAAGGGCGATCCCGCTGGTCGGAAGCGGATGATCGAGAGCAACCTGCGGTTGGT
GGTGAAGATCGCCCGGCGCTATGTCAATCGCGGACTGTCCCTGCTCGACCTGATCGAGGAAGGCAACCTAGGCCTGATCC
GCGCCGTGGAGAAGTTCGATCCGGAGCGCGGATTCCGGTTCTCGACCTACGCCACCTGGTGGATCCGCCAGACCATCGAA
CGGGCCATCATGAACCAGACCCGGACCATTCGCTTGCCGATCCATGTGGTCAAGGAGCTCAACGTCTACCTGCGTGCGGC
GCGGGAACTGACCCACAAGCTCGACCACGAACCTTCACCCGAAGAAATCGCCAACCTGCTGGAGAAGCCGGTCGCCGAGG
TCAAGCGCATGCTCGGCCTGAACGAACGGGTGACTTCGGTAGACGTCTCTCTTGGTCCGGACTCGGACAAGACCCTGCTG
GATACGCTCACCGACGATCGCCCCACCGATCCGTGCGAGCTGCTGCAGGATGACGATCTCAGCGAAAGCATCGACCAGTG
GCTGACGGAACTCACCGACAAGCAGCGTGAGGTGGTGATTCGCCGCTTCGGCTTGCGCGGGCACGAAAGCAGCACGCTGG
AAGAGGTCGGTCAGGAAATCGGCCTGACCCGCGAGCGGGTTCGTCAGATCCAGGTCGAGGCGCTGAAGCGCCTGCGGGAG
ATCCTGGAGAAGAACGGCCTGTCGAGTGACGCGCTGTTCCAGTGA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (179-253)

• Sigma-70 region 2 (Sigma70_r2) (99-168)

• Sigma-70, region 4 (Sigma70_r4) (267-320)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (61-94)

3D structure

• AlphaFold DB: A0A0H2ZEU1

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	66.463	98.204	0.653