Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8668_RS19560 Genome accession   NZ_CP033439
Coordinates   4187404..4187898 (+) Length   164 a.a.
NCBI ID   WP_121335868.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SP4528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4182404..4192898
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8668_RS19545 (D8668_19545) - 4183071..4183523 (+) 453 WP_121335871.1 TIGR03751 family conjugal transfer lipoprotein -
  D8668_RS19550 (D8668_19550) - 4183523..4186423 (+) 2901 WP_121335870.1 conjugative transfer ATPase -
  D8668_RS19555 (D8668_19555) - 4186437..4187222 (+) 786 WP_121335869.1 thioredoxin domain-containing protein -
  D8668_RS19560 (D8668_19560) radC 4187404..4187898 (+) 495 WP_121335868.1 DNA repair protein RadC Machinery gene
  D8668_RS19565 (D8668_19565) - 4188061..4188507 (+) 447 WP_121335867.1 TIGR03757 family integrating conjugative element protein -
  D8668_RS19570 (D8668_19570) - 4188504..4189451 (+) 948 WP_121335866.1 TIGR03756 family integrating conjugative element protein -
  D8668_RS19575 (D8668_19575) - 4189462..4190856 (+) 1395 WP_121335865.1 integrating conjugative element protein -
  D8668_RS19580 (D8668_19580) - 4190853..4191212 (+) 360 WP_121335864.1 hypothetical protein -
  D8668_RS19585 (D8668_19585) - 4191228..4192751 (+) 1524 WP_121335863.1 conjugal transfer protein TraG N-terminal domain-containing protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18113.92 Da        Isoelectric Point: 6.0823

>NTDB_id=283448 D8668_RS19560 WP_121335868.1 4187404..4187898(+) (radC) [Pseudomonas aeruginosa strain SP4528]
MSLIVNDSCVEPRFAPVSQSDDWIIRQAIALLEQRVFKAGPLLDQPQAVKDYLRLKLVAEPNEVFAIVFMNSQHRVLAYE
PMFKGTLDSTAVYPRVVVQRALELNAGAVIFSHQHPSGCTEPSSADRVLTDRLKAALALIDVRVLDHIIVGQGTPYSFAE
SGLL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=283448 D8668_RS19560 WP_121335868.1 4187404..4187898(+) (radC) [Pseudomonas aeruginosa strain SP4528]
ATGTCTCTCATCGTCAATGACTCCTGCGTGGAGCCACGTTTTGCCCCAGTGTCCCAATCTGATGACTGGATCATCCGACA
GGCCATCGCGCTGCTGGAACAACGTGTTTTCAAGGCCGGGCCGCTTCTTGACCAGCCACAGGCGGTGAAGGACTACCTGC
GCCTGAAACTCGTCGCAGAACCGAACGAAGTGTTCGCCATCGTGTTCATGAACAGCCAGCATCGGGTATTGGCCTACGAG
CCGATGTTCAAGGGCACGCTCGATTCGACCGCGGTTTATCCGCGTGTCGTCGTGCAGCGGGCATTGGAGTTGAATGCCGG
CGCGGTGATTTTTTCGCACCAGCATCCCTCGGGATGCACTGAGCCGTCGAGCGCGGATCGCGTTTTGACCGACCGACTGA
AGGCTGCGTTGGCGCTCATCGACGTGCGAGTGCTGGACCACATCATCGTCGGTCAAGGCACGCCGTACTCATTCGCAGAA
TCCGGCTTGCTGTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-163)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

43.151

89.024

0.384