Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8668_RS18500 Genome accession   NZ_CP033439
Coordinates   4015384..4015878 (+) Length   164 a.a.
NCBI ID   WP_031684483.1    Uniprot ID   -
Organism   Pseudomonas aeruginosa strain SP4528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4010384..4020878
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8668_RS18475 (D8668_18475) - 4010917..4011921 (+) 1005 WP_031684488.1 lambda-exonuclease family protein -
  D8668_RS18480 (D8668_18480) - 4012014..4012907 (+) 894 WP_031684487.1 hypothetical protein -
  D8668_RS18485 (D8668_18485) - 4013253..4013600 (-) 348 WP_031684486.1 helix-turn-helix transcriptional regulator -
  D8668_RS18490 (D8668_18490) - 4013776..4014789 (+) 1014 WP_031684485.1 hypothetical protein -
  D8668_RS18495 (D8668_18495) - 4014797..4015264 (+) 468 WP_031684484.1 lysozyme inhibitor LprI family protein -
  D8668_RS18500 (D8668_18500) radC 4015384..4015878 (+) 495 WP_031684483.1 DNA repair protein RadC Machinery gene
  D8668_RS18505 (D8668_18505) - 4016064..4016258 (-) 195 WP_025297465.1 AlpA family transcriptional regulator -
  D8668_RS18510 (D8668_18510) - 4016293..4016970 (-) 678 WP_049956867.1 inovirus Gp2 family protein -
  D8668_RS18520 (D8668_18520) - 4017901..4018749 (+) 849 WP_071536111.1 hypothetical protein -
  D8668_RS18525 (D8668_18525) - 4018996..4020507 (-) 1512 WP_200264823.1 ATP-binding protein -

Sequence

Protein


Download         Length: 164 a.a.        Molecular weight: 18190.91 Da        Isoelectric Point: 6.9790

>NTDB_id=283444 D8668_RS18500 WP_031684483.1 4015384..4015878(+) (radC) [Pseudomonas aeruginosa strain SP4528]
MTAKFKAGESAGTYIADAPVTEADIVQMAQRLASKRLRKGQALHQPKEVFSYLQILLQHYEHEVFALLLLDSKHRVIRFE
ELFRGTLDSASVYPREVVKVALEHNAAAIVLVHNHPSGDPEPSHADRVLTSRLKQALEMVGVRTLDHIIVGAEGCVSLAE
QGYL

Nucleotide


Download         Length: 495 bp        

>NTDB_id=283444 D8668_RS18500 WP_031684483.1 4015384..4015878(+) (radC) [Pseudomonas aeruginosa strain SP4528]
ATGACTGCCAAATTCAAGGCCGGCGAGTCCGCTGGCACCTACATCGCCGATGCACCGGTGACCGAAGCCGATATCGTGCA
AATGGCACAACGCCTAGCCAGCAAGCGGCTGCGCAAAGGCCAGGCCCTGCATCAACCTAAGGAAGTCTTCAGCTACCTGC
AGATCCTGCTGCAGCACTATGAACATGAGGTATTTGCATTGCTACTGCTGGACAGCAAACACCGTGTCATTCGATTTGAG
GAGCTGTTTCGCGGCACCCTGGACAGTGCCAGTGTCTATCCCCGCGAAGTCGTCAAAGTAGCGCTGGAACACAATGCAGC
AGCAATAGTGTTGGTGCATAACCACCCTTCCGGTGATCCGGAGCCAAGCCATGCAGACCGTGTCCTGACCAGCAGGCTCA
AGCAAGCACTCGAGATGGTGGGCGTACGCACGCTCGACCACATCATCGTGGGGGCTGAGGGCTGCGTATCGCTCGCCGAA
CAGGGATACCTGTGA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(44-162)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

44.286

85.366

0.378

Multiple sequence alignment