Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M30_RS15645 Genome accession   NZ_CP028218
Coordinates   3051599..3052243 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 3046599..3057243
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS15615 (C7M30_03101) - 3046986..3047354 (-) 369 WP_144500544.1 hypothetical protein -
  C7M30_RS15620 - 3047468..3047593 (-) 126 WP_154796978.1 hypothetical protein -
  C7M30_RS15625 (C7M30_03102) degQ 3047815..3047955 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C7M30_RS15630 (C7M30_03103) comQ 3048140..3049039 (+) 900 WP_038828674.1 class 1 isoprenoid biosynthesis enzyme Regulator
  C7M30_RS15635 (C7M30_03104) comX 3049027..3049194 (+) 168 WP_038828676.1 competence pheromone ComX Regulator
  C7M30_RS15640 (C7M30_03105) comP 3049209..3051518 (+) 2310 WP_038828679.1 two-component system sensor histidine kinase ComP Regulator
  C7M30_RS15645 (C7M30_03106) comA 3051599..3052243 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C7M30_RS15650 (C7M30_03107) yuxO 3052262..3052642 (+) 381 WP_017695528.1 hotdog fold thioesterase -
  C7M30_RS15655 (C7M30_03108) mnhG 3052681..3053055 (-) 375 WP_014477830.1 monovalent cation/H(+) antiporter subunit G -
  C7M30_RS15660 (C7M30_03109) mrpF 3053039..3053323 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C7M30_RS15665 (C7M30_03110) mrpE 3053323..3053799 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C7M30_RS15670 (C7M30_03111) mrpD 3053805..3055286 (-) 1482 WP_041850587.1 Na+/H+ antiporter subunit D -
  C7M30_RS15675 (C7M30_03112) mrpC 3055279..3055620 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C7M30_RS15680 (C7M30_03113) mrpB 3055620..3056051 (-) 432 WP_003228819.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=283444 C7M30_RS15645 WP_003220716.1 3051599..3052243(+) (comA) [Bacillus subtilis strain SRCM102756]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=283444 C7M30_RS15645 WP_003220716.1 3051599..3052243(+) (comA) [Bacillus subtilis strain SRCM102756]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATCTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGCTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment