Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   D8668_RS11655 Genome accession   NZ_CP033439
Coordinates   2465832..2466341 (+) Length   169 a.a.
NCBI ID   WP_016487841.1    Uniprot ID   A0ABM9FB01
Organism   Pseudomonas aeruginosa strain SP4528     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2460832..2471341
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8668_RS11630 (D8668_11630) - 2461143..2461898 (+) 756 WP_033990463.1 hypothetical protein -
  D8668_RS11635 (D8668_11635) - 2462002..2462256 (+) 255 WP_003087397.1 YkgJ family cysteine cluster protein -
  D8668_RS11640 (D8668_11640) - 2462390..2462998 (+) 609 WP_003104390.1 START domain-containing protein -
  D8668_RS11645 (D8668_11645) - 2463220..2464419 (+) 1200 WP_014603550.1 site-specific integrase -
  D8668_RS11650 (D8668_11650) - 2464416..2465480 (+) 1065 WP_016487843.1 PDDEXK nuclease domain-containing protein -
  D8668_RS11655 (D8668_11655) radC 2465832..2466341 (+) 510 WP_016487841.1 DNA repair protein RadC Machinery gene
  D8668_RS11660 (D8668_11660) - 2466408..2468864 (-) 2457 WP_016487840.1 AAA family ATPase -
  D8668_RS11665 (D8668_11665) - 2469257..2470084 (+) 828 WP_003092327.1 DUF932 domain-containing protein -

Sequence

Protein


Download         Length: 169 a.a.        Molecular weight: 18781.39 Da        Isoelectric Point: 6.4951

>NTDB_id=283432 D8668_RS11655 WP_016487841.1 2465832..2466341(+) (radC) [Pseudomonas aeruginosa strain SP4528]
MSQLSFPSFDSCLLVRDAHGRYLPASADDILEAARQVIDRKMQRGAEFTSPAAVKEYLRTKLASFEHEVFVVLFMDTRHR
LIEYREMFHGTIDGASVYPREVVKEALRLNAAAVVVSHNHPSGNPEPSAADRALTQRLKEALGLVDVRVLDHIIVAGNET
ASFAEHGLI

Nucleotide


Download         Length: 510 bp        

>NTDB_id=283432 D8668_RS11655 WP_016487841.1 2465832..2466341(+) (radC) [Pseudomonas aeruginosa strain SP4528]
ATGTCGCAACTGTCCTTTCCCTCGTTCGATTCCTGTCTGCTGGTGCGCGACGCGCACGGGCGCTATCTACCGGCATCGGC
CGACGACATTCTGGAAGCTGCGCGCCAGGTCATTGACCGGAAAATGCAGCGCGGAGCAGAGTTCACTTCGCCGGCGGCGG
TCAAGGAATACTTGCGTACAAAGTTGGCCAGCTTCGAGCATGAGGTGTTCGTAGTGCTGTTCATGGATACGCGCCATCGT
CTGATCGAATACAGGGAGATGTTCCACGGCACTATTGACGGTGCGTCGGTGTATCCGCGCGAAGTGGTCAAGGAGGCGCT
GCGGCTCAATGCGGCGGCGGTCGTCGTTTCGCACAACCATCCGAGCGGAAACCCCGAGCCGAGCGCGGCTGACCGGGCGC
TGACCCAGCGGCTCAAGGAAGCGTTGGGTCTGGTGGACGTGCGCGTGCTCGATCACATCATCGTTGCGGGCAACGAAACG
GCATCGTTCGCCGAGCATGGGCTGATCTAG

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(48-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

45

82.84

0.373