Detailed information    

insolico Bioinformatically predicted

Overview

Name   recR   Type   Machinery gene
Locus tag   D8668_RS11390 Genome accession   NZ_CP033439
Coordinates   2416488..2417084 (+) Length   198 a.a.
NCBI ID   WP_003087237.1    Uniprot ID   Q9I3H9
Organism   Pseudomonas aeruginosa strain SP4528     
Function   promote later steps in plasmid transformation (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2411488..2422084
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  D8668_RS11365 (D8668_11365) - 2412417..2412794 (+) 378 WP_003083354.1 hypothetical protein -
  D8668_RS11375 (D8668_11375) - 2413048..2413914 (-) 867 WP_074241328.1 ABC transporter substrate-binding protein -
  D8668_RS11380 (D8668_11380) dnaX 2413951..2416037 (+) 2087 Protein_2199 DNA polymerase III subunit gamma/tau -
  D8668_RS11385 (D8668_11385) - 2416083..2416409 (+) 327 WP_003087236.1 YbaB/EbfC family nucleoid-associated protein -
  D8668_RS11390 (D8668_11390) recR 2416488..2417084 (+) 597 WP_003087237.1 recombination mediator RecR Machinery gene
  D8668_RS11395 (D8668_11395) - 2417207..2418355 (+) 1149 WP_003087244.1 acyl-CoA dehydrogenase family protein -
  D8668_RS11400 (D8668_11400) - 2418368..2418907 (-) 540 WP_003087245.1 CbrC family protein -
  D8668_RS11405 (D8668_11405) - 2418981..2419868 (-) 888 WP_003087246.1 SDR family NAD(P)-dependent oxidoreductase -
  D8668_RS11410 (D8668_11410) - 2419865..2421448 (-) 1584 WP_003121915.1 NAD(P)/FAD-dependent oxidoreductase -
  D8668_RS33025 - 2421571..2421738 (+) 168 Protein_2206 TetR family transcriptional regulator -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 21173.42 Da        Isoelectric Point: 6.0063

>NTDB_id=283431 D8668_RS11390 WP_003087237.1 2416488..2417084(+) (recR) [Pseudomonas aeruginosa strain SP4528]
MSFSPLIRQLIESLRILPGVGQKSAQRMALMLLERDRSGGLKLAQALTAAMEGVGHCRQCRTLSEEELCPQCADPRRDDS
LLCVVEGPLDVFAVEQTGYRGRYFVLKGHLSPLDGLGPEAIGIPELEARIRDGAFSEVILATNPTVEGEATAHYIAQLLA
GRGLTLSRIAHGVPLGGELELVDGGTLAHALAGRRPIS

Nucleotide


Download         Length: 597 bp        

>NTDB_id=283431 D8668_RS11390 WP_003087237.1 2416488..2417084(+) (recR) [Pseudomonas aeruginosa strain SP4528]
ATGAGTTTCAGCCCGCTGATCCGCCAACTGATCGAGTCCCTGCGCATTCTTCCCGGTGTCGGGCAGAAGTCGGCCCAGCG
CATGGCGCTGATGCTGCTGGAGCGCGATCGCAGCGGCGGCCTGAAGCTGGCCCAGGCGTTGACCGCCGCGATGGAAGGGG
TCGGTCATTGCCGGCAGTGCCGTACCCTCAGCGAGGAGGAGCTGTGCCCGCAGTGCGCCGACCCGCGACGCGACGACTCG
CTGCTCTGCGTGGTGGAAGGCCCGCTGGACGTATTCGCGGTGGAGCAGACCGGCTACCGCGGCCGCTATTTCGTGCTCAA
GGGACACCTGTCGCCGCTCGACGGCCTGGGGCCGGAGGCGATCGGCATTCCCGAACTGGAAGCGCGGATCAGGGACGGAG
CCTTCAGCGAGGTGATCCTCGCCACCAACCCCACCGTGGAAGGCGAGGCCACCGCCCACTATATCGCCCAGCTACTGGCC
GGCCGCGGCCTGACCTTGTCGCGTATCGCCCATGGCGTGCCGCTGGGTGGCGAGCTGGAGCTGGTCGATGGCGGCACCTT
GGCCCACGCCCTGGCCGGACGGCGGCCGATCTCCTGA

Domains

Predicted by InterProScan.

Toprim domain (Toprim_4)

(81-170)

RecR protein (RecR_ZnF)

(41-78)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5Z2V

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recR Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539

48.241

100

0.485
  recR Bacillus subtilis subsp. subtilis str. 168

48.469

98.99

0.48