Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C7M30_RS10620 Genome accession   NZ_CP028218
Coordinates   2059494..2060606 (-) Length   370 a.a.
NCBI ID   WP_015715082.1    Uniprot ID   A0A8E0S8Z1
Organism   Bacillus subtilis strain SRCM102756     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2054494..2065606
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS10605 (C7M30_02116) gyrA 2054584..2057049 (-) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  C7M30_RS10610 (C7M30_02117) gyrB 2057260..2059176 (-) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C7M30_RS10615 (C7M30_02118) remB 2059231..2059476 (-) 246 WP_003219266.1 extracellular matrix regulator RemB -
  C7M30_RS10620 (C7M30_02119) recF 2059494..2060606 (-) 1113 WP_015715082.1 DNA replication/repair protein RecF Machinery gene
  C7M30_RS10625 (C7M30_02120) rlbA 2060622..2060837 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  C7M30_RS10630 (C7M30_02121) dnaN 2060968..2062104 (-) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  C7M30_RS10635 (C7M30_02122) dnaA 2062293..2063633 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  C7M30_RS10640 rpmH 2064260..2064394 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  C7M30_RS10645 (C7M30_02123) rnpA 2064546..2064896 (+) 351 WP_003242628.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42318.37 Da        Isoelectric Point: 7.3661

>NTDB_id=283425 C7M30_RS10620 WP_015715082.1 2059494..2060606(-) (recF) [Bacillus subtilis strain SRCM102756]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLHDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRQAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=283425 C7M30_RS10620 WP_015715082.1 2059494..2060606(-) (recF) [Bacillus subtilis strain SRCM102756]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCG
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAGGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTACCTTCATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACGCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCTCAAGGACAGCAGCGAACGACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCAAGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-350)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.73

100

0.997

Multiple sequence alignment