Detailed information    

insolico Bioinformatically predicted

Overview


Name   nin/comJ   Type   Regulator
Locus tag   C7M30_RS08710 Genome accession   NZ_CP028218
Coordinates   1702508..1702906 (+) Length   132 a.a.
NCBI ID   WP_021481824.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102756     
Function   represses the expression of nucA (predicted from homology)   
Competence regulation

Genomic Context


Location: 1697508..1707906
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS08685 (C7M30_01739) hxlR 1698244..1698606 (-) 363 WP_003246265.1 transcriptional activator HxlR -
  C7M30_RS08690 (C7M30_01740) hxlA 1698838..1699470 (+) 633 WP_160244278.1 3-hexulose-6-phosphate synthase -
  C7M30_RS08695 (C7M30_01741) hxlB 1699476..1700033 (+) 558 WP_160244279.1 6-phospho-3-hexuloisomerase -
  C7M30_RS08700 (C7M30_01742) tlpC 1700143..1701864 (+) 1722 WP_160244280.1 methyl-accepting chemotaxis protein TlpC -
  C7M30_RS08705 (C7M30_01743) nucA/comI 1702032..1702481 (+) 450 WP_014475770.1 DNA-entry nuclease Machinery gene
  C7M30_RS08710 (C7M30_01744) nin/comJ 1702508..1702906 (+) 399 WP_021481824.1 DNA-entry nuclease inhibitor Regulator
  C7M30_RS08715 (C7M30_01745) bglC 1702943..1704376 (-) 1434 WP_160244281.1 6-phospho-beta-glucosidase -
  C7M30_RS08720 (C7M30_01746) - 1704449..1705177 (-) 729 WP_021481826.1 AAA family ATPase -
  C7M30_RS08725 (C7M30_01747) - 1705196..1705537 (-) 342 WP_032724911.1 DUF3147 family protein -
  C7M30_RS08730 (C7M30_01748) - 1705525..1705947 (-) 423 WP_170939093.1 MarR family transcriptional regulator -
  C7M30_RS08735 (C7M30_01749) yckD 1706075..1706407 (-) 333 WP_160244282.1 YckD family protein -
  C7M30_RS08740 (C7M30_01750) yckC 1706488..1706943 (-) 456 WP_049140212.1 RDD family protein -
  C7M30_RS08745 - 1706963..1707160 (-) 198 WP_160244283.1 hypothetical protein -

Sequence


Protein


Download         Length: 132 a.a.        Molecular weight: 14962.93 Da        Isoelectric Point: 4.8991

>NTDB_id=283419 C7M30_RS08710 WP_021481824.1 1702508..1702906(+) (nin/comJ) [Bacillus subtilis strain SRCM102756]
MIKSWKPQELSISYHQFTVFQKDSTPPVMDWTDEAIEKGYAAADGAISFEAQRNTKAFILLRLNSSETVNSYEKKVTVPF
HVTENGIHIESIMSKRLSFDLPKGDYQLTCWTVPAEMSDLHADTYIIDAVSV

Nucleotide


Download         Length: 399 bp        

>NTDB_id=283419 C7M30_RS08710 WP_021481824.1 1702508..1702906(+) (nin/comJ) [Bacillus subtilis strain SRCM102756]
TTGATCAAATCATGGAAGCCGCAAGAACTTTCGATTTCATATCATCAATTTACTGTATTTCAAAAGGATTCTACACCTCC
TGTAATGGATTGGACTGACGAAGCGATTGAAAAAGGATATGCTGCGGCAGACGGAGCCATTTCCTTTGAGGCACAGCGAA
ATACAAAGGCCTTTATTCTTTTGCGCCTGAACAGTTCAGAAACAGTAAACTCCTACGAAAAAAAAGTGACTGTTCCTTTT
CATGTCACAGAAAACGGAATTCATATTGAAAGCATCATGTCTAAAAGACTGTCCTTTGATCTGCCTAAAGGAGACTATCA
ATTGACATGCTGGACTGTGCCGGCTGAAATGTCAGATTTGCACGCCGACACTTATATTATTGATGCTGTTTCTGTGTAA

Domains


Predicted by InterproScan.

(9-129)


Secondary structure


Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure


Source ID Structure

Transmembrane helices


Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.



Visualization of predicted probability:


Similar proteins


Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nin/comJ Bacillus subtilis subsp. subtilis str. 168

99.242

100

0.992


Multiple sequence alignment