Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M30_RS05070 Genome accession   NZ_CP028218
Coordinates   957049..957627 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM102756     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 952049..962627
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M30_RS05035 (C7M30_01012) lepB 952054..952560 (-) 507 WP_003233128.1 signal peptidase I -
  C7M30_RS05040 (C7M30_01013) yhjE 952562..953185 (-) 624 WP_010886465.1 VTT domain-containing protein -
  C7M30_RS05045 (C7M30_01014) - 953337..953708 (+) 372 WP_014476361.1 hypothetical protein -
  C7M30_RS05050 (C7M30_01015) yhjC 953907..954107 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C7M30_RS05055 (C7M30_01016) yhjB 954104..955573 (+) 1470 WP_160244072.1 sodium:solute symporter -
  C7M30_RS05060 (C7M30_01017) yhjA 955617..955886 (-) 270 WP_038829151.1 excalibur calcium-binding domain-containing protein -
  C7M30_RS05065 (C7M30_01018) yhxD 956103..957002 (+) 900 WP_160244996.1 SDR family oxidoreductase -
  C7M30_RS05070 (C7M30_01019) comK 957049..957627 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C7M30_RS05075 (C7M30_01020) yhzC 957920..958153 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M30_RS05080 (C7M30_01021) yhxC 958181..959038 (-) 858 WP_160244073.1 SDR family oxidoreductase -
  C7M30_RS05085 (C7M30_01022) comW 959150..960679 (+) 1530 WP_160244074.1 FAD-dependent oxidoreductase -
  C7M30_RS05090 (C7M30_01023) hemAT 960818..962116 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=283408 C7M30_RS05070 WP_003245329.1 957049..957627(-) (comK) [Bacillus subtilis strain SRCM102756]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=283408 C7M30_RS05070 WP_003245329.1 957049..957627(-) (comK) [Bacillus subtilis strain SRCM102756]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCAAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAAAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTTCCGAAAAGGCAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment