Detailed information NTG0283390

Bioinformatically predicted

Overview

• Name: rpoS
• Type: Regulator
• Locus tag: EDM51_RS23400
• Genome accession: NZ_CP033401
• Coordinates: 4625679..4626671 (+)
• Length: 330 a.a.
• NCBI ID: WP_000081550.1
• Uniprot ID: A0A370V765
• Organism: Escherichia coli strain WCHEC020031
• Function: regulation of chitinases (predicted from homology) Competence regulation

Genomic Context

Location: 4620679..4631671

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
EDM51_RS23370 (EDM51_23370)	ispD	4620740..4621450 (+)	711	WP_000246138.1	2-C-methyl-D-erythritol 4-phosphate cytidylyltransferase	-
EDM51_RS23375 (EDM51_23375)	ispF	4621450..4621929 (+)	480	WP_001374730.1	2-C-methyl-D-erythritol 2,4-cyclodiphosphate synthase	-
EDM51_RS23380 (EDM51_23380)	truD	4621926..4622975 (+)	1050	WP_000568943.1	tRNA pseudouridine(13) synthase TruD	-
EDM51_RS23385 (EDM51_23385)	surE	4622956..4623717 (+)	762	WP_001374723.1	5'/3'-nucleotidase SurE	-
EDM51_RS23390 (EDM51_23390)	pcm	4623711..4624337 (+)	627	WP_000254708.1	protein-L-isoaspartate O-methyltransferase	-
EDM51_RS23395 (EDM51_23395)	nlpD	4624522..4625616 (+)	1095	WP_306174120.1	murein hydrolase activator NlpD	-
EDM51_RS23400 (EDM51_23400)	rpoS	4625679..4626671 (+)	993	WP_000081550.1	RNA polymerase sigma factor RpoS	Regulator
EDM51_RS23405 (EDM51_23405)	ygbN	4626765..4628129 (-)	1365	WP_000104456.1	GntP family transporter	-
EDM51_RS23410 (EDM51_23410)	ygbM	4628218..4628994 (-)	777	WP_001136918.1	HPr family phosphocarrier protein	-
EDM51_RS23415 (EDM51_23415)	ygbL	4628999..4629637 (-)	639	WP_001278994.1	aldolase	-
EDM51_RS23420 (EDM51_23420)	otnK	4629634..4630896 (-)	1263	WP_000590392.1	3-oxo-tetronate kinase	-

Sequence

Protein

• Length: 330 a.a.
• Molecular weight: 37972.84 Da
• Isoelectric Point: 4.5597

>NTDB_id=283390 EDM51_RS23400 WP_000081550.1 4625679..4626671(+) (rpoS) [Escherichia coli strain WCHEC020031]
MSQNTLKVHDLNEDAEFDENGVEVFDEKALVEEEPSDNDLAEEELLSQGATQRVLDATQLYLGEIGYSPLLTAEEEVYFA
RRALRGDVASRRRMIESNLRLVVKIARRYGNRGLALLDLIEEGNLGLIRAVEKFDPERGFRFSTYATWWIRQTIERAIMN
QTRTIRLPIHIVKELNVYLRTARELSHKLDHEPSAEEIAEQLDKPVDDVSRMLRLNERITSVDTPLGGDSEKALLDILAD
EKENGPEDTTQDDDMKQSIVKWLFELNAKQREVLARRFGLLGYEAATLEDVGREIGLTRERVRQIQVEGLRRLREILQTQ
GLNIEALFRE

Nucleotide

• Length: 993 bp

>NTDB_id=283390 EDM51_RS23400 WP_000081550.1 4625679..4626671(+) (rpoS) [Escherichia coli strain WCHEC020031]
ATGAGTCAGAATACGCTGAAAGTTCATGATTTAAATGAAGATGCGGAATTTGATGAGAACGGAGTTGAGGTTTTTGACGA
AAAGGCCTTAGTAGAAGAGGAACCCAGTGATAACGATTTGGCCGAAGAGGAACTGTTATCGCAGGGAGCCACACAGCGTG
TGTTGGACGCGACTCAGCTTTACCTTGGTGAGATTGGTTATTCACCACTGTTAACGGCCGAAGAAGAAGTTTATTTTGCG
CGTCGCGCACTGCGTGGAGATGTCGCCTCTCGCCGCCGGATGATCGAGAGTAACTTGCGTCTGGTGGTAAAAATTGCCCG
CCGTTATGGCAATCGTGGTCTGGCGTTGCTGGACCTTATCGAAGAGGGCAACCTGGGGCTGATCCGCGCGGTAGAGAAGT
TTGACCCGGAACGTGGTTTCCGCTTCTCAACATACGCAACCTGGTGGATTCGCCAGACGATTGAACGGGCGATTATGAAC
CAAACCCGTACTATTCGTTTGCCGATTCACATCGTAAAGGAGCTGAACGTTTACCTGCGAACCGCACGTGAGTTGTCCCA
TAAGCTGGACCATGAACCAAGTGCGGAAGAGATCGCAGAGCAACTGGATAAGCCAGTTGATGACGTCAGCCGTATGCTTC
GTCTTAACGAGCGCATTACCTCGGTAGACACCCCGCTGGGTGGTGATTCCGAAAAAGCGTTGCTGGACATCCTGGCCGAT
GAAAAAGAGAACGGTCCGGAAGATACCACGCAAGATGACGATATGAAGCAGAGCATCGTCAAATGGCTGTTCGAGCTGAA
CGCCAAACAGCGTGAAGTGCTGGCACGTCGATTCGGTTTGCTGGGGTACGAAGCGGCAACACTGGAAGATGTAGGTCGTG
AAATTGGCCTCACCCGTGAACGTGTTCGCCAGATTCAGGTTGAAGGCCTGCGCCGTTTGCGTGAAATCCTGCAAACGCAG
GGGCTGAATATCGAAGCGCTGTTCCGCGAGTAA

Domains

Predicted by InterProScan.

• Sigma-70 region 3 (Sigma70_r3) (174-248)

• Sigma-70 region 2 (Sigma70_r2) (94-163)

• Sigma-70 factor, region 1.2 (Sigma70_r1_2) (56-88)

• Sigma-70, region 4 (Sigma70_r4) (262-315)

3D structure

• AlphaFold DB: A0A370V765

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rpoS	Vibrio cholerae O1 biovar El Tor strain E7946	73.065	97.879	0.715