Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M29_RS20085 Genome accession   NZ_CP028217
Coordinates   3911102..3911680 (-) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM102751     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3906102..3916680
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS20050 (C7M29_03950) lepB 3906113..3906619 (-) 507 WP_161477099.1 signal peptidase I -
  C7M29_RS20055 (C7M29_03951) yhjE 3906621..3907244 (-) 624 WP_010886465.1 VTT domain-containing protein -
  C7M29_RS20060 (C7M29_03952) - 3907396..3907767 (+) 372 WP_046160244.1 hypothetical protein -
  C7M29_RS20065 (C7M29_03953) yhjC 3907966..3908166 (+) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C7M29_RS20070 (C7M29_03954) yhjB 3908163..3909632 (+) 1470 WP_106073785.1 sodium:solute symporter -
  C7M29_RS20075 (C7M29_03955) yhjA 3909675..3909944 (-) 270 WP_024571730.1 excalibur calcium-binding domain-containing protein -
  C7M29_RS20080 (C7M29_03956) yhxD 3910158..3911057 (+) 900 WP_003245421.1 SDR family oxidoreductase -
  C7M29_RS20085 (C7M29_03957) comK 3911102..3911680 (-) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C7M29_RS20090 (C7M29_03958) yhzC 3911973..3912206 (+) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M29_RS20095 (C7M29_03959) yhxC 3912234..3913091 (-) 858 WP_161477100.1 SDR family oxidoreductase -
  C7M29_RS20100 (C7M29_03960) comW 3913203..3914732 (+) 1530 WP_130572185.1 FAD-dependent oxidoreductase -
  C7M29_RS20105 (C7M29_03961) hemAT 3914871..3916169 (+) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=283383 C7M29_RS20085 WP_003245329.1 3911102..3911680(-) (comK) [Bacillus subtilis strain SRCM102751]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=283383 C7M29_RS20085 WP_003245329.1 3911102..3911680(-) (comK) [Bacillus subtilis strain SRCM102751]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCCGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCA
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCGAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATATCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGGCAGGAATTTATGCTGTACCCGAAGGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAGCGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment