Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C7M29_RS17925 Genome accession   NZ_CP028217
Coordinates   3509081..3509359 (-) Length   92 a.a.
NCBI ID   WP_003244728.1    Uniprot ID   A0A199WGU6
Organism   Bacillus subtilis strain SRCM102751     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3504081..3514359
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS17905 (C7M29_03520) ade 3504145..3505878 (-) 1734 WP_161477014.1 adenine deaminase -
  C7M29_RS17910 (C7M29_03521) ktrC 3506034..3506699 (-) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  C7M29_RS17915 (C7M29_03522) ykqA 3506762..3507589 (-) 828 WP_015715821.1 gamma-glutamylcyclotransferase -
  C7M29_RS17920 (C7M29_03523) kinC 3507605..3508891 (-) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  C7M29_RS17925 (C7M29_03524) abrB 3509081..3509359 (-) 279 WP_003244728.1 transcriptional regulator AbhA Regulator
  C7M29_RS17930 (C7M29_03525) mreBH 3509643..3510650 (+) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  C7M29_RS17935 (C7M29_03526) ykpC 3510751..3510885 (+) 135 WP_003238865.1 protein YkpC -
  C7M29_RS17940 (C7M29_03527) ampS 3510994..3512226 (+) 1233 WP_003232341.1 aminopeptidase -
  C7M29_RS17945 (C7M29_03528) panEB 3512260..3513171 (-) 912 WP_161477015.1 ketopantoate reductase family protein -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10256.07 Da        Isoelectric Point: 5.8808

>NTDB_id=283370 C7M29_RS17925 WP_003244728.1 3509081..3509359(-) (abrB) [Bacillus subtilis strain SRCM102751]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLEEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=283370 C7M29_RS17925 WP_003244728.1 3509081..3509359(-) (abrB) [Bacillus subtilis strain SRCM102751]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCGAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A199WGU6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment