Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EDM51_RS18305 Genome accession   NZ_CP033401
Coordinates   3589403..3589879 (-) Length   158 a.a.
NCBI ID   WP_001186747.1    Uniprot ID   -
Organism   Escherichia coli strain WCHEC020031     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3584403..3594879
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EDM51_RS18265 (EDM51_18265) setC 3584546..3585730 (-) 1185 WP_001172877.1 sugar efflux transporter -
  EDM51_RS18270 (EDM51_18270) rhuM 3586160..3586288 (-) 129 Protein_3370 RhuM family protein -
  EDM51_RS18275 (EDM51_18275) - 3586523..3587368 (-) 846 WP_001274561.1 DUF4942 domain-containing protein -
  EDM51_RS18280 (EDM51_18280) - 3587453..3587650 (-) 198 WP_000772032.1 DUF957 domain-containing protein -
  EDM51_RS18285 (EDM51_18285) - 3587670..3588158 (-) 489 WP_000761716.1 DUF5983 family protein -
  EDM51_RS18290 (EDM51_18290) - 3588155..3588532 (-) 378 WP_001094437.1 TA system toxin CbtA family protein -
  EDM51_RS18295 (EDM51_18295) - 3588579..3588956 (-) 378 WP_001390338.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EDM51_RS18300 (EDM51_18300) - 3589119..3589340 (-) 222 WP_000692345.1 DUF987 domain-containing protein -
  EDM51_RS18305 (EDM51_18305) radC 3589403..3589879 (-) 477 WP_001186747.1 RadC family protein Machinery gene
  EDM51_RS18310 (EDM51_18310) - 3589895..3590065 (-) 171 Protein_3378 antirestriction protein -
  EDM51_RS18315 (EDM51_18315) - 3590067..3590831 (-) 765 Protein_3379 ESPR-type extended signal peptide-containing protein -
  EDM51_RS18320 (EDM51_18320) - 3591203..3591967 (-) 765 WP_162869019.1 GTPase family protein -
  EDM51_RS18325 (EDM51_18325) hha 3592357..3592568 (+) 212 Protein_3381 hemolysin expression modulator Hha -
  EDM51_RS24645 (EDM51_18335) - 3592911..3593108 (-) 198 WP_001545803.1 hypothetical protein -
  EDM51_RS18340 (EDM51_18340) - 3593312..3593881 (+) 570 WP_000148641.1 inovirus Gp2 family protein -
  EDM51_RS18345 (EDM51_18345) - 3594047..3594430 (+) 384 WP_000271020.1 putative zinc ribbon protein -
  EDM51_RS18350 (EDM51_18350) - 3594427..3594852 (+) 426 WP_032181455.1 putative zinc ribbon protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17642.22 Da        Isoelectric Point: 6.9859

>NTDB_id=283370 EDM51_RS18305 WP_001186747.1 3589403..3589879(-) (radC) [Escherichia coli strain WCHEC020031]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=283370 EDM51_RS18305 WP_001186747.1 3589403..3589879(-) (radC) [Escherichia coli strain WCHEC020031]
ATGCAACAGCTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGTGAAGTGATTAAACGCGCCCTGTATCACAATGCCGCTGCTGTGGTGCTGGCACA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392

Multiple sequence alignment