Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M29_RS14670 Genome accession   NZ_CP028217
Coordinates   2802615..2803235 (-) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 2797615..2808235
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS14650 (C7M29_02880) dnaD 2797900..2798598 (+) 699 WP_004398499.1 DNA replication protein DnaD -
  C7M29_RS14655 (C7M29_02881) nth 2798617..2799276 (+) 660 WP_009967580.1 endonuclease III -
  C7M29_RS14660 (C7M29_02882) ypoC 2799273..2799767 (+) 495 WP_009967579.1 YpoC family protein -
  C7M29_RS14665 (C7M29_02883) ponA 2799843..2802593 (-) 2751 WP_161476902.1 PBP1A family penicillin-binding protein -
  C7M29_RS14670 (C7M29_02884) recU 2802615..2803235 (-) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C7M29_RS14675 (C7M29_02885) yppC 2803276..2804238 (+) 963 WP_080529462.1 DUF2515 domain-containing protein -
  C7M29_RS14680 (C7M29_02886) sspM 2804263..2804367 (-) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C7M29_RS14685 (C7M29_02887) yppD 2804566..2804811 (+) 246 WP_004398488.1 YppD family protein -
  C7M29_RS14690 (C7M29_02888) yppE 2804857..2805228 (+) 372 WP_003246080.1 YppE family protein -
  C7M29_RS14695 (C7M29_02889) yppF 2805267..2805455 (-) 189 WP_003230690.1 YppF family protein -
  C7M29_RS14700 (C7M29_02890) sppG 2805643..2806020 (+) 378 WP_004398696.1 YppG family protein -
  C7M29_RS14705 (C7M29_02891) ypqA 2806041..2806460 (-) 420 WP_042976351.1 Hsp20/alpha crystallin family protein -
  C7M29_RS14710 (C7M29_02892) ptsA 2806598..2807104 (+) 507 WP_029726788.1 PTS glucose transporter subunit IIA -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=283364 C7M29_RS14670 WP_004399067.1 2802615..2803235(-) (recU) [Bacillus subtilis strain SRCM102751]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=283364 C7M29_RS14670 WP_004399067.1 2802615..2803235(-) (recU) [Bacillus subtilis strain SRCM102751]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment