Detailed information    

insolico Bioinformatically predicted

Overview

Name   recO   Type   Machinery gene
Locus tag   C7M29_RS13130 Genome accession   NZ_CP028217
Coordinates   2530825..2531592 (+) Length   255 a.a.
NCBI ID   WP_003230055.1    Uniprot ID   A0AAE2SJ05
Organism   Bacillus subtilis strain SRCM102751     
Function   ssDNA annealing; plasmid transformation (predicted from homology)   
DNA processing Homologous recombination

Genomic Context

Location: 2525825..2536592
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS13100 (C7M29_02569) pgpH 2526121..2528256 (+) 2136 WP_010886570.1 cyclic-di-AMP phosphodiesterase PgpH -
  C7M29_RS13105 (C7M29_02570) ybeY 2528257..2528730 (+) 474 WP_003230039.1 rRNA maturation RNase YbeY -
  C7M29_RS13110 (C7M29_02571) unpK 2528711..2529082 (+) 372 WP_015384119.1 diacylglycerol kinase family protein -
  C7M29_RS13115 (C7M29_02572) - 2529201..2529611 (+) 411 WP_003230049.1 cytidine deaminase -
  C7M29_RS13120 (C7M29_02573) era 2529592..2530497 (+) 906 WP_003230051.1 GTPase Era -
  C7M29_RS13125 (C7M29_02574) yqzL 2530645..2530788 (+) 144 WP_003230053.1 YqzL family protein -
  C7M29_RS13130 (C7M29_02575) recO 2530825..2531592 (+) 768 WP_003230055.1 DNA repair protein RecO Machinery gene
  C7M29_RS13135 (C7M29_02576) glyQ 2531890..2532777 (+) 888 WP_003226213.1 glycine--tRNA ligase subunit alpha -
  C7M29_RS13140 (C7M29_02577) glyS 2532770..2534809 (+) 2040 WP_069964217.1 glycine--tRNA ligase subunit beta -
  C7M29_RS13145 (C7M29_02578) ccpN 2534942..2535580 (+) 639 WP_003237058.1 transcriptional regulator CcpN -
  C7M29_RS13150 (C7M29_02579) ppsR 2535606..2536418 (+) 813 WP_003230064.1 pyruvate, water dikinase regulatory protein -

Sequence

Protein


Download         Length: 255 a.a.        Molecular weight: 29328.02 Da        Isoelectric Point: 8.3080

>NTDB_id=283352 C7M29_RS13130 WP_003230055.1 2530825..2531592(+) (recO) [Bacillus subtilis strain SRCM102751]
MLTKCEGIVLRTNDYGETNKIVTLLTREHGKIGVMARGAKKPNSRLSAVSQPFLYGSFLMQKTSGLGTLQQGEMILSMRG
IREDLFLTAYAAYVAELVDRGTEEKKPNPYLFEFILESLKQLNEGTDPDVITFIVQMKMLGVMGLYPELNHCVHCKSQDG
TFHFSVRDNGFICHRCFEKDPYRIPIKPQTARLLRLFYYFDLSRLGNVSLKEETKAELKQVIDLYYEEYSGLYLKSKRFL
DQMESMKHLMGENKS

Nucleotide


Download         Length: 768 bp        

>NTDB_id=283352 C7M29_RS13130 WP_003230055.1 2530825..2531592(+) (recO) [Bacillus subtilis strain SRCM102751]
ATGCTGACAAAATGTGAAGGGATCGTTCTTCGCACAAATGATTACGGAGAGACGAATAAAATCGTAACATTACTGACAAG
AGAACACGGAAAAATAGGTGTTATGGCACGAGGCGCCAAAAAACCGAACAGCCGTTTATCAGCAGTCAGCCAGCCCTTTT
TGTATGGTTCTTTCTTAATGCAAAAAACATCGGGCCTCGGAACGCTTCAGCAGGGGGAAATGATCCTCAGCATGAGAGGC
ATCAGGGAAGACTTGTTTTTAACAGCATATGCTGCCTATGTTGCTGAGTTAGTCGACAGAGGCACAGAAGAAAAAAAGCC
AAATCCTTATTTATTTGAATTCATATTAGAATCATTAAAACAGTTGAATGAAGGAACAGATCCGGATGTTATCACCTTCA
TTGTTCAAATGAAGATGCTCGGTGTCATGGGCCTGTATCCTGAGCTGAATCATTGTGTACATTGTAAAAGCCAAGACGGA
ACCTTTCATTTCTCTGTTCGTGATAATGGTTTTATATGCCACCGCTGTTTTGAAAAAGATCCTTACAGGATACCGATTAA
ACCGCAAACGGCAAGGCTGTTAAGGCTCTTTTACTATTTTGATCTGTCGAGACTCGGCAATGTGTCCTTAAAAGAGGAAA
CAAAAGCTGAATTAAAGCAAGTGATTGATTTATATTACGAAGAATATTCGGGATTGTATTTAAAATCAAAGCGCTTTTTA
GATCAAATGGAAAGCATGAAACATCTTATGGGTGAAAACAAAAGTTGA

Domains

Predicted by InterproScan.

Recombination protein O C terminal (RecO_C)

(82-237)

Recombination protein O N terminal (RecO_N)

(1-75)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recO Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment