Detailed information
Bioinformatically predicted
Overview
| Name | nucA/comI | Type | Machinery gene |
| Locus tag | C7M29_RS12880 | Genome accession | NZ_CP028217 |
| Coordinates | 2487741..2488151 (+) | Length | 136 a.a. |
| NCBI ID | WP_009967785.1 | Uniprot ID | A0A6I4D881 |
| Organism | Bacillus subtilis strain SRCM102751 | ||
| Function | cleavage of dsDNA into ssDNA (predicted from homology) DNA processing |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| Prophage | 2445830..2502995 | 2487741..2488151 | within | 0 |
Gene organization within MGE regions
Location: 2445830..2502995
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| C7M29_RS12610 (C7M29_02476) | czcR | 2445830..2446696 (-) | 867 | WP_015384170.1 | LysR family transcriptional regulator CzcR | - |
| C7M29_RS12615 (C7M29_02477) | yrdR | 2446822..2447787 (+) | 966 | WP_015714359.1 | DMT family transporter | - |
| C7M29_RS12620 (C7M29_02478) | yrzO | 2447805..2447948 (+) | 144 | WP_014477437.1 | YrzO family protein | - |
| C7M29_RS12625 (C7M29_02479) | yrkA | 2448230..2449534 (+) | 1305 | WP_046381208.1 | hemolysin family protein | - |
| C7M29_RS12630 (C7M29_02480) | bltD | 2449691..2450149 (-) | 459 | WP_003229879.1 | spermine/spermidine acetyltransferase | - |
| C7M29_RS12635 (C7M29_02481) | blt | 2450318..2451520 (-) | 1203 | WP_061891047.1 | multidrug efflux MFS transporter Blt | - |
| C7M29_RS12640 (C7M29_02482) | bltR | 2451637..2452458 (+) | 822 | WP_041850099.1 | multidrug efflux transcriptional regulator BltR | - |
| C7M29_RS12645 | - | 2452549..2452653 (+) | 105 | Protein_2423 | N-acetylmuramoyl-L-alanine amidase | - |
| C7M29_RS12650 | - | 2452631..2452774 (+) | 144 | WP_032729138.1 | hypothetical protein | - |
| C7M29_RS12655 (C7M29_02483) | yrkC | 2453000..2453560 (+) | 561 | WP_061891048.1 | cupin domain-containing protein | - |
| C7M29_RS20955 | - | 2453939..2454256 (+) | 318 | WP_015251633.1 | hypothetical protein | - |
| C7M29_RS12660 (C7M29_02484) | yrkD | 2454278..2454538 (+) | 261 | WP_003237170.1 | metal-sensitive transcriptional regulator | - |
| C7M29_RS12665 (C7M29_02485) | yrkE | 2454687..2455169 (+) | 483 | WP_015251635.1 | DsrE/DsrF/DrsH-like family protein | - |
| C7M29_RS20960 | - | 2455193..2455289 (+) | 97 | Protein_2429 | rhodanese-like domain-containing protein | - |
| C7M29_RS12675 (C7M29_02486) | yrkF | 2455355..2455912 (+) | 558 | WP_048655089.1 | sulfurtransferase TusA family protein | - |
| C7M29_RS12680 | - | 2455933..2456329 (+) | 397 | Protein_2431 | DsrE/DsrF/DrsH-like family protein | - |
| C7M29_RS12685 (C7M29_02487) | yrkH | 2456362..2457496 (+) | 1135 | Protein_2432 | MBL fold metallo-hydrolase | - |
| C7M29_RS12690 (C7M29_02488) | yrkI | 2457530..2457757 (+) | 228 | WP_012116896.1 | sulfurtransferase TusA family protein | - |
| C7M29_RS12695 (C7M29_02489) | yrkJ | 2457817..2458593 (+) | 777 | WP_161476852.1 | sulfite exporter TauE/SafE family protein | - |
| C7M29_RS12700 (C7M29_02490) | - | 2459367..2460464 (+) | 1098 | WP_038429356.1 | glycosyl hydrolase | - |
| C7M29_RS12705 (C7M29_02491) | - | 2460949..2462292 (-) | 1344 | WP_161476853.1 | MATE family efflux transporter | - |
| C7M29_RS12710 (C7M29_02492) | - | 2462423..2463103 (+) | 681 | WP_161476854.1 | TetR/AcrR family transcriptional regulator C-terminal domain-containing protein | - |
| C7M29_RS12715 (C7M29_02493) | - | 2463664..2464056 (-) | 393 | Protein_2438 | sigma-70 family RNA polymerase sigma factor | - |
| C7M29_RS12720 (C7M29_02494) | yqaB | 2464062..2464580 (-) | 519 | WP_161476855.1 | ImmA/IrrE family metallo-endopeptidase | - |
| C7M29_RS12725 (C7M29_02496) | yqaC | 2464845..2465381 (+) | 537 | WP_038429352.1 | AAA family ATPase | - |
| C7M29_RS12730 (C7M29_02497) | - | 2465577..2466119 (-) | 543 | WP_038429351.1 | PadR family transcriptional regulator | - |
| C7M29_RS12735 (C7M29_02498) | - | 2466116..2466958 (-) | 843 | WP_116316512.1 | sialate O-acetylesterase | - |
| C7M29_RS12740 (C7M29_02499) | - | 2467381..2467782 (+) | 402 | WP_053216511.1 | hypothetical protein | - |
| C7M29_RS12745 (C7M29_02500) | - | 2467975..2468247 (+) | 273 | Protein_2444 | ATP-binding protein | - |
| C7M29_RS12750 (C7M29_02501) | - | 2468252..2468401 (+) | 150 | WP_076458162.1 | hypothetical protein | - |
| C7M29_RS21125 | - | 2468693..2468916 (+) | 224 | Protein_2446 | RusA family crossover junction endodeoxyribonuclease | - |
| C7M29_RS12760 | yqaO | 2469000..2469206 (+) | 207 | Protein_2447 | XtrA/YqaO family protein | - |
| C7M29_RS20965 | - | 2469278..2469461 (+) | 184 | Protein_2448 | hypothetical protein | - |
| C7M29_RS12765 (C7M29_02502) | - | 2469566..2469832 (-) | 267 | WP_029318115.1 | hypothetical protein | - |
| C7M29_RS12770 | yqaQ | 2470130..2470539 (+) | 410 | Protein_2450 | sigma factor-like helix-turn-helix DNA-binding protein | - |
| C7M29_RS12775 (C7M29_02504) | cotD | 2471098..2471313 (+) | 216 | WP_076458314.1 | spore coat protein CotD | - |
| C7M29_RS12780 (C7M29_02505) | - | 2471498..2471590 (-) | 93 | WP_029318114.1 | YjcZ family sporulation protein | - |
| C7M29_RS12785 | - | 2471631..2471717 (-) | 87 | WP_073991391.1 | YjcZ family sporulation protein | - |
| C7M29_RS12790 (C7M29_02506) | terS | 2471899..2472687 (+) | 789 | WP_029318113.1 | phage terminase small subunit | - |
| C7M29_RS12795 (C7M29_02507) | - | 2472684..2472869 (+) | 186 | Protein_2455 | phage terminase large subunit | - |
| C7M29_RS12800 | - | 2472896..2473036 (+) | 141 | Protein_2456 | phage holin family protein | - |
| C7M29_RS12805 (C7M29_02508) | - | 2473081..2474046 (+) | 966 | WP_029318111.1 | N-acetylmuramoyl-L-alanine amidase | - |
| C7M29_RS12810 (C7M29_02509) | - | 2474240..2474962 (+) | 723 | WP_029318110.1 | NPP1 family protein | - |
| C7M29_RS12815 (C7M29_02510) | - | 2475168..2475629 (-) | 462 | WP_029318109.1 | SMI1/KNR4 family protein | - |
| C7M29_RS12820 (C7M29_02511) | - | 2475642..2477414 (-) | 1773 | WP_161476856.1 | T7SS effector LXG polymorphic toxin | - |
| C7M29_RS12825 (C7M29_02512) | phrE | 2477643..2477777 (-) | 135 | WP_014114495.1 | phosphatase RapE inhibitor PhrE | - |
| C7M29_RS12830 (C7M29_02513) | - | 2478187..2479320 (+) | 1134 | WP_161476857.1 | tetratricopeptide repeat protein | - |
| C7M29_RS20805 (C7M29_02514) | - | 2479310..2479468 (+) | 159 | WP_162830452.1 | hypothetical protein | - |
| C7M29_RS12835 (C7M29_02516) | arsR | 2480309..2480626 (+) | 318 | WP_004399122.1 | arsenical resistance operon transcriptional regulator ArsR | - |
| C7M29_RS12840 (C7M29_02517) | arsK | 2480686..2481126 (+) | 441 | WP_128993176.1 | ArsI/CadI family heavy metal resistance metalloenzyme | - |
| C7M29_RS12845 (C7M29_02518) | acr3 | 2481149..2482189 (+) | 1041 | WP_032722149.1 | arsenite efflux transporter Acr3 | - |
| C7M29_RS12850 (C7M29_02519) | arsC | 2482201..2482620 (+) | 420 | WP_029318100.1 | arsenate reductase (thioredoxin) | - |
| C7M29_RS12855 (C7M29_02520) | - | 2482831..2483064 (-) | 234 | Protein_2468 | helix-turn-helix domain-containing protein | - |
| C7M29_RS12860 (C7M29_02521) | - | 2483392..2484387 (-) | 996 | WP_128993175.1 | acryloyl-CoA reductase | - |
| C7M29_RS12865 (C7M29_02522) | - | 2484545..2485138 (+) | 594 | WP_161476858.1 | TetR/AcrR family transcriptional regulator | - |
| C7M29_RS20970 | - | 2485571..2485749 (+) | 179 | Protein_2471 | hypothetical protein | - |
| C7M29_RS12870 (C7M29_02523) | spoIVCA | 2485707..2487167 (+) | 1461 | WP_250620476.1 | site-specific DNA recombinase SpoIVCA | - |
| C7M29_RS12875 (C7M29_02524) | - | 2487198..2487545 (-) | 348 | Protein_2473 | sigma-70 family RNA polymerase sigma factor | - |
| C7M29_RS12880 (C7M29_02525) | nucA/comI | 2487741..2488151 (+) | 411 | WP_009967785.1 | sporulation-specific Dnase NucB | Machinery gene |
| C7M29_RS12885 (C7M29_02526) | yqeB | 2488184..2488906 (-) | 723 | WP_010886572.1 | hypothetical protein | - |
| C7M29_RS12890 (C7M29_02527) | gnd | 2489158..2490051 (+) | 894 | WP_043857850.1 | phosphogluconate dehydrogenase (NAD(+)-dependent, decarboxylating) | - |
| C7M29_RS12895 (C7M29_02528) | yqeD | 2490070..2490696 (-) | 627 | WP_161476859.1 | TVP38/TMEM64 family protein | - |
| C7M29_RS12900 (C7M29_02529) | cwlH | 2490883..2491635 (+) | 753 | WP_128993171.1 | N-acetylmuramoyl-L-alanine amidase CwlH | - |
| C7M29_RS12905 (C7M29_02530) | yqeF | 2491887..2492618 (+) | 732 | WP_029317882.1 | SGNH/GDSL hydrolase family protein | - |
| C7M29_RS12910 | - | 2492924..2493064 (-) | 141 | WP_003226124.1 | sporulation histidine kinase inhibitor Sda | - |
| C7M29_RS12915 (C7M29_02532) | yqeG | 2493426..2493944 (+) | 519 | WP_003226126.1 | YqeG family HAD IIIA-type phosphatase | - |
| C7M29_RS12920 (C7M29_02533) | yqeH | 2493948..2495048 (+) | 1101 | WP_003229966.1 | ribosome biogenesis GTPase YqeH | - |
| C7M29_RS12925 (C7M29_02534) | aroE | 2495066..2495908 (+) | 843 | WP_029317883.1 | shikimate dehydrogenase | - |
| C7M29_RS12930 (C7M29_02535) | yhbY | 2495902..2496192 (+) | 291 | WP_003226133.1 | ribosome assembly RNA-binding protein YhbY | - |
| C7M29_RS12935 (C7M29_02536) | nadD | 2496204..2496773 (+) | 570 | WP_004398676.1 | nicotinate-nucleotide adenylyltransferase | - |
| C7M29_RS12940 (C7M29_02537) | yqeK | 2496763..2497323 (+) | 561 | WP_014480316.1 | bis(5'-nucleosyl)-tetraphosphatase (symmetrical) YqeK | - |
| C7M29_RS12945 (C7M29_02538) | rsfS | 2497341..2497697 (+) | 357 | WP_041333759.1 | ribosome silencing factor | - |
| C7M29_RS12950 (C7M29_02539) | yqeM | 2497694..2498437 (+) | 744 | WP_003229973.1 | class I SAM-dependent methyltransferase | - |
| C7M29_RS12955 (C7M29_02540) | comER | 2498503..2499324 (-) | 822 | WP_014480313.1 | late competence protein ComER | - |
| C7M29_RS12960 (C7M29_02541) | comEA | 2499408..2500025 (+) | 618 | WP_004398514.1 | competence protein ComEA | Machinery gene |
| C7M29_RS12965 (C7M29_02542) | comEB | 2500092..2500661 (+) | 570 | WP_003229978.1 | ComE operon protein 2 | - |
| C7M29_RS12970 (C7M29_02543) | comEC | 2500665..2502995 (+) | 2331 | WP_161476860.1 | DNA internalization-related competence protein ComEC/Rec2 | Machinery gene |
Sequence
Protein
Download Length: 136 a.a. Molecular weight: 14967.97 Da Isoelectric Point: 5.1853
>NTDB_id=283348 C7M29_RS12880 WP_009967785.1 2487741..2488151(+) (nucA/comI) [Bacillus subtilis strain SRCM102751]
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
MKKWMAGLFLAAAVLLCLMVPQQIQGASSYDKVLYFPLSRYPETGSHIRDAIAEGHPDICTIDRDGADKRREESLKGIPT
KPGYDRDEWPMAVCEEGGAGADVRYVTPSDNRGAGSWVGNQMSSYPDGTRVLFIVQ
Nucleotide
Download Length: 411 bp
>NTDB_id=283348 C7M29_RS12880 WP_009967785.1 2487741..2488151(+) (nucA/comI) [Bacillus subtilis strain SRCM102751]
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTACCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
ATGAAAAAATGGATGGCAGGCCTGTTTCTTGCTGCAGCAGTTCTTCTTTGTTTAATGGTTCCGCAACAGATCCAAGGCGC
ATCTTCGTATGACAAAGTGTTATATTTTCCGCTGTCTCGTTATCCGGAAACCGGCAGTCATATTAGGGATGCGATTGCAG
AGGGACATCCAGATATTTGTACCATTGACAGAGATGGAGCAGACAAAAGGCGGGAGGAATCTTTAAAGGGAATCCCGACC
AAGCCGGGCTATGACCGGGATGAGTGGCCGATGGCGGTCTGCGAGGAAGGCGGTGCAGGGGCTGATGTCCGATATGTGAC
GCCTTCTGATAATCGCGGCGCCGGCTCGTGGGTAGGGAATCAAATGAGCAGCTACCCTGACGGCACCAGAGTGCTGTTTA
TTGTGCAGTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| nucA/comI | Bacillus subtilis subsp. subtilis str. 168 |
62.609 |
84.559 |
0.529 |