Detailed information    

insolico Bioinformatically predicted

Overview

Name   comC   Type   Machinery gene
Locus tag   C7M29_RS11830 Genome accession   NZ_CP028217
Coordinates   2303042..2303788 (+) Length   248 a.a.
NCBI ID   WP_088467305.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   processing and translocation of ComGC; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2298042..2308788
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS11815 (C7M29_02325) - 2298268..2298459 (-) 192 WP_003222590.1 hypothetical protein -
  C7M29_RS11820 (C7M29_02326) valS 2298907..2301549 (+) 2643 WP_017697542.1 valine--tRNA ligase -
  C7M29_RS11825 (C7M29_02327) folC 2301610..2302902 (+) 1293 WP_041339279.1 folylpolyglutamate synthase/dihydrofolate synthase family protein -
  C7M29_RS11830 (C7M29_02328) comC 2303042..2303788 (+) 747 WP_088467305.1 A24 family peptidase Machinery gene
  C7M29_RS11835 (C7M29_02329) spoIIB 2303922..2304920 (+) 999 WP_088467304.1 stage II sporulation protein SpoIIB -
  C7M29_RS11840 (C7M29_02330) maf 2305073..2305642 (+) 570 WP_004398496.1 Maf family nucleotide pyrophosphatase -
  C7M29_RS11845 (C7M29_02331) radC 2305679..2306374 (+) 696 WP_021480240.1 DNA repair protein RadC -
  C7M29_RS11850 (C7M29_02332) mreB 2306466..2307479 (+) 1014 WP_003229650.1 cell shape-determining protein MreB -
  C7M29_RS11855 (C7M29_02333) mreC 2307510..2308382 (+) 873 WP_003222609.1 rod shape-determining protein MreC -

Sequence

Protein


Download         Length: 248 a.a.        Molecular weight: 26455.05 Da        Isoelectric Point: 9.7944

>NTDB_id=283344 C7M29_RS11830 WP_088467305.1 2303042..2303788(+) (comC) [Bacillus subtilis strain SRCM102751]
MLSILFIFGLILGSFYYTAGCRIPLHLSIIAPRSSCPFCRRTLTPAELIPILSFLFQKGKCKSCGHRISFMYPAAELVTA
CLFAAAGIRFGTSLELFPAVVFISLLIIVAVTDIHFMLIPNRILIFFLPFLAAARLISPLDSWYAGLLGAAAGFLFLAVI
AAITHGGVGGGDIKLFAVIGFMLGVKMLAAAFFFSVLIGALYGAAAVLTGRLAKRQPLPFAPAIAAGSILAYLYGDSIIS
FYIKMALG

Nucleotide


Download         Length: 747 bp        

>NTDB_id=283344 C7M29_RS11830 WP_088467305.1 2303042..2303788(+) (comC) [Bacillus subtilis strain SRCM102751]
ATGCTATCCATTCTTTTTATCTTCGGACTTATCCTTGGTTCTTTTTACTATACGGCCGGGTGCCGTATCCCCTTACATCT
ATCTATTATTGCGCCCCGTTCATCATGCCCGTTTTGCCGGCGGACATTAACTCCTGCAGAATTAATTCCCATCCTGTCAT
TCCTATTTCAAAAAGGTAAATGTAAAAGCTGCGGGCATAGGATTTCTTTTATGTATCCCGCAGCAGAGCTTGTGACAGCG
TGTTTATTTGCTGCCGCAGGAATACGCTTTGGCACATCGCTGGAACTGTTTCCCGCTGTGGTGTTTATCTCTCTTCTCAT
TATTGTTGCAGTGACAGATATTCATTTTATGCTGATTCCAAATCGAATATTGATTTTCTTTCTTCCCTTTTTGGCGGCCG
CGAGATTGATTTCTCCACTTGATTCCTGGTATGCAGGCCTGCTAGGTGCGGCAGCCGGATTTCTATTTCTGGCTGTAATT
GCCGCAATCACCCATGGGGGAGTAGGGGGAGGAGATATTAAATTATTTGCGGTGATTGGCTTTATGCTTGGTGTGAAAAT
GCTGGCAGCTGCCTTTTTCTTTTCAGTTTTGATAGGTGCATTATATGGAGCGGCAGCTGTTCTGACTGGTAGACTCGCTA
AAAGGCAGCCGCTTCCCTTCGCCCCCGCTATAGCCGCAGGGAGCATTTTAGCCTATTTATACGGTGACTCTATCATTTCT
TTTTATATCAAAATGGCATTGGGCTGA

Domains

Predicted by InterproScan.

Type IV leader peptidase family (Peptidase_A24)

(101-203)

Bacterial Peptidase A24 N-terminal domain (A24_N_bact)

(7-90)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comC Bacillus subtilis subsp. subtilis str. 168

99.194

100

0.992

Multiple sequence alignment