Detailed information    

insolico Bioinformatically predicted

Overview

Name   comA   Type   Regulator
Locus tag   C7M29_RS09845 Genome accession   NZ_CP028217
Coordinates   1913168..1913812 (+) Length   214 a.a.
NCBI ID   WP_003220716.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102751     
Function   promoting transcription of comS (predicted from homology)   
Competence regulation

Genomic Context

Location: 1908168..1918812
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS09815 (C7M29_01930) - 1908518..1908886 (-) 369 WP_003243784.1 hypothetical protein -
  C7M29_RS09820 - 1909000..1909125 (-) 126 WP_003228793.1 hypothetical protein -
  C7M29_RS09825 (C7M29_01931) degQ 1909347..1909487 (+) 141 WP_003220708.1 degradation enzyme regulation protein DegQ Regulator
  C7M29_RS09830 (C7M29_01932) - 1909672..1910541 (+) 870 WP_161476745.1 polyprenyl synthetase family protein -
  C7M29_RS09835 (C7M29_01933) comX 1910538..1910759 (+) 222 WP_014114983.1 competence pheromone ComX -
  C7M29_RS09840 (C7M29_01934) comP 1910775..1913087 (+) 2313 WP_047183111.1 histidine kinase Regulator
  C7M29_RS09845 (C7M29_01935) comA 1913168..1913812 (+) 645 WP_003220716.1 two-component system response regulator ComA Regulator
  C7M29_RS09850 (C7M29_01936) yuxO 1913831..1914211 (+) 381 WP_014477831.1 hotdog fold thioesterase -
  C7M29_RS09855 (C7M29_01937) mnhG 1914252..1914626 (-) 375 WP_003244302.1 monovalent cation/H(+) antiporter subunit G -
  C7M29_RS09860 (C7M29_01938) mrpF 1914610..1914894 (-) 285 WP_003228814.1 Na(+)/H(+) antiporter subunit F1 -
  C7M29_RS09865 (C7M29_01939) mrpE 1914894..1915370 (-) 477 WP_003228815.1 Na+/H+ antiporter subunit E -
  C7M29_RS09870 (C7M29_01940) mrpD 1915376..1916857 (-) 1482 WP_046381299.1 Na+/H+ antiporter subunit D -
  C7M29_RS09875 (C7M29_01941) mrpC 1916850..1917191 (-) 342 WP_003220730.1 Na(+)/H(+) antiporter subunit C -
  C7M29_RS09880 (C7M29_01942) mrpB 1917191..1917622 (-) 432 WP_038429537.1 Na(+)/H(+) antiporter subunit B -

Sequence

Protein


Download         Length: 214 a.a.        Molecular weight: 24128.51 Da        Isoelectric Point: 4.6857

>NTDB_id=283339 C7M29_RS09845 WP_003220716.1 1913168..1913812(+) (comA) [Bacillus subtilis strain SRCM102751]
MKKILVIDDHPAVMEGTKTILETDSNLSVDCLSPEPSEQFIKQHDFSSYDLILMDLNLGGEVNGMELSKQILQENPHCKI
IVYTGYEVEDYFEEAIRAGLHGAISKTESKEKITQYIYHVLNGEILVDFAYFKQLMTQQKTKPAPSSQKEQDVLTPRECL
ILQEVEKGFTNQEIADALHLSKRSIEYSLTSIFNKLNVGSRTEAVLIAKSDGVL

Nucleotide


Download         Length: 645 bp        

>NTDB_id=283339 C7M29_RS09845 WP_003220716.1 1913168..1913812(+) (comA) [Bacillus subtilis strain SRCM102751]
ATGAAAAAGATACTAGTGATTGATGACCATCCGGCTGTCATGGAAGGCACCAAGACAATTTTGGAAACGGATTCGAATTT
GTCTGTTGATTGTCTCAGTCCTGAACCGAGCGAACAGTTTATCAAGCAGCATGATTTCTCGTCATATGATCTCATTTTAA
TGGATCTGAATTTAGGCGGCGAGGTCAATGGGATGGAGCTTTCTAAACAGATTTTACAAGAGAATCCTCATTGTAAAATT
ATCGTGTATACCGGTTATGAGGTCGAGGATTATTTCGAGGAAGCGATTCGTGCGGGTCTGCACGGTGCCATCAGCAAAAC
GGAATCTAAAGAAAAGATCACCCAATACATATACCACGTACTCAACGGAGAAATTTTAGTCGATTTTGCTTACTTTAAAC
AGCTGATGACTCAGCAAAAAACAAAGCCGGCTCCTTCCTCTCAAAAAGAACAAGATGTGCTCACACCTAGAGAATGCCTG
ATTCTTCAAGAAGTTGAAAAGGGATTTACAAACCAAGAAATCGCAGATGCCCTTCATTTAAGCAAGCGGTCCATTGAATA
CAGTTTGACATCGATTTTCAATAAGCTGAATGTCGGTTCACGGACGGAAGCGGTTTTGATTGCGAAATCAGACGGTGTAC
TTTAA

Domains

Predicted by InterproScan.

Bacterial regulatory proteins, luxR family (GerE)

(152-208)

Response regulator receiver domain (Response_reg)

(4-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comA Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment