Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C7M29_RS04680 Genome accession   NZ_CP028217
Coordinates   905679..905969 (+) Length   96 a.a.
NCBI ID   WP_003226760.1    Uniprot ID   A0A7G9PCZ4
Organism   Bacillus subtilis strain SRCM102751     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 900679..910969
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M29_RS04665 (C7M29_00921) yabE 900874..902187 (-) 1314 WP_161476523.1 ubiquitin-like domain-containing protein -
  C7M29_RS04670 (C7M29_00922) dayD 902343..903110 (-) 768 WP_014475570.1 TatD family hydrolase -
  C7M29_RS04675 (C7M29_00923) metG 903190..905184 (-) 1995 WP_003226758.1 methionine--tRNA ligase -
  C7M29_RS04680 (C7M29_00924) abrB 905679..905969 (+) 291 WP_003226760.1 transition state genes transcriptional regulator AbrB Regulator
  C7M29_RS04685 (C7M29_00925) rsmI 906018..906896 (-) 879 WP_038428262.1 16S rRNA (cytidine(1402)-2'-O)-methyltransferase -
  C7M29_RS04690 (C7M29_00926) yazA 906871..907170 (-) 300 WP_003242983.1 GIY-YIG nuclease family protein -
  C7M29_RS04695 (C7M29_00927) trmNF 907157..907900 (-) 744 WP_161476524.1 tRNA1(Val) (adenine(37)-N6)-methyltransferase -
  C7M29_RS04700 (C7M29_00928) yabA 907959..908318 (-) 360 WP_003218308.1 replication initiation-control protein YabA -
  C7M29_RS04705 (C7M29_00929) ricT 908333..909160 (-) 828 WP_024571363.1 competence/sporulation regulator complex protein RicT -
  C7M29_RS04710 (C7M29_00930) holB 909163..910152 (-) 990 WP_003226770.1 DNA polymerase III subunit delta' -
  C7M29_RS04715 (C7M29_00931) yaaR 910164..910604 (-) 441 WP_009966249.1 YaaR family protein -
  C7M29_RS04720 (C7M29_00932) darA 910617..910946 (-) 330 WP_003242755.1 cyclic di-AMP receptor DarA -

Sequence

Protein


Download         Length: 96 a.a.        Molecular weight: 10772.62 Da        Isoelectric Point: 6.3482

>NTDB_id=283320 C7M29_RS04680 WP_003226760.1 905679..905969(+) (abrB) [Bacillus subtilis strain SRCM102751]
MFMKSTGIVRKVDELGRVVIPIELRRTLGIAEKDALEIYVDDEKIILKKYKPNMTCQVTGEVSDDNLKLAGGKLVLSKEG
AEQIISEIQNQLQNLK

Nucleotide


Download         Length: 291 bp        

>NTDB_id=283320 C7M29_RS04680 WP_003226760.1 905679..905969(+) (abrB) [Bacillus subtilis strain SRCM102751]
ATGTTTATGAAATCTACTGGTATTGTACGTAAAGTTGATGAATTAGGACGTGTAGTTATTCCTATCGAACTGCGTCGTAC
TCTTGGAATCGCAGAAAAAGATGCTCTTGAAATCTATGTTGATGATGAAAAAATCATCCTTAAAAAATATAAACCAAACA
TGACTTGCCAAGTAACTGGTGAAGTTTCTGATGATAACCTTAAACTTGCAGGCGGTAAATTGGTTCTTAGTAAAGAAGGC
GCTGAGCAAATCATCAGCGAAATCCAAAACCAGCTTCAAAACCTTAAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(55-90)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(10-52)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A7G9PCZ4

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment