Detailed information    

insolico Bioinformatically predicted

Overview

Name   abrB   Type   Regulator
Locus tag   C7M28_RS19625 Genome accession   NZ_CP028215
Coordinates   3753652..3753930 (+) Length   92 a.a.
NCBI ID   WP_160216288.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102750     
Function   repression of comK; repression of rok (predicted from homology)   
Competence regulation

Genomic Context

Location: 3748652..3758930
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS19605 (C7M28_03856) panEB 3749840..3750751 (+) 912 WP_046380996.1 ketopantoate reductase family protein -
  C7M28_RS19610 (C7M28_03857) ampS 3750785..3752017 (-) 1233 WP_003232341.1 aminopeptidase -
  C7M28_RS19615 (C7M28_03858) ykpC 3752126..3752260 (-) 135 WP_003238865.1 protein YkpC -
  C7M28_RS19620 (C7M28_03859) mreBH 3752361..3753368 (-) 1008 WP_003245743.1 cell shape-determining protein MreBH -
  C7M28_RS19625 (C7M28_03860) abrB 3753652..3753930 (+) 279 WP_160216288.1 transcriptional regulator AbhA Regulator
  C7M28_RS19630 (C7M28_03861) kinC 3754120..3755406 (+) 1287 WP_003232333.1 two-component sensor histidine kinase KinC -
  C7M28_RS19635 (C7M28_03862) ykqA 3755422..3756249 (+) 828 WP_003232330.1 gamma-glutamylcyclotransferase -
  C7M28_RS19640 (C7M28_03863) ktrC 3756312..3756977 (+) 666 WP_003222311.1 Ktr system potassium transporter KtrC -
  C7M28_RS19645 (C7M28_03864) ade 3757132..3758865 (+) 1734 WP_003245362.1 adenine deaminase -

Sequence

Protein


Download         Length: 92 a.a.        Molecular weight: 10255.13 Da        Isoelectric Point: 7.9989

>NTDB_id=283304 C7M28_RS19625 WP_160216288.1 3753652..3753930(+) (abrB) [Bacillus subtilis strain SRCM102750]
MKSIGVVRKVDELGRIVMPIELRRALDIAIKDSIEFFVDGDKIILKKYKPHGVCLMTGEITSENKEYGNGKITLSPEGAQ
LLLKEIQAALKE

Nucleotide


Download         Length: 279 bp        

>NTDB_id=283304 C7M28_RS19625 WP_160216288.1 3753652..3753930(+) (abrB) [Bacillus subtilis strain SRCM102750]
ATGAAATCAATAGGTGTTGTGAGAAAAGTAGATGAATTAGGCCGCATTGTCATGCCGATTGAGTTGAGACGGGCATTGGA
TATTGCCATAAAAGACAGCATTGAGTTTTTTGTTGACGGAGATAAAATTATCTTGAAAAAGTACAAACCTCATGGCGTTT
GTTTAATGACTGGAGAAATCACTTCAGAAAATAAAGAATACGGCAACGGTAAAATTACGCTAAGCCCTGAGGGTGCACAG
CTGCTTCTCAAAGAAATTCAAGCCGCTTTAAAAGAATAA

Domains

Predicted by InterproScan.

AbrB C-terminal domain (AbrB_C)

(53-88)

Antidote-toxin recognition MazE, bacterial antitoxin (MazE_antitoxin)

(8-51)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  abrB Bacillus subtilis subsp. subtilis str. 168

58.242

98.913

0.576

Multiple sequence alignment