Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EB670_RS21475 Genome accession   NZ_CP033378
Coordinates   4359792..4360268 (+) Length   158 a.a.
NCBI ID   WP_001366830.1    Uniprot ID   -
Organism   Escherichia coli strain L73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4354792..4365268
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB670_RS21445 (EB670_21445) - 4355476..4356360 (+) 885 WP_122927394.1 GTPase -
  EB670_RS21450 (EB670_21450) - 4356563..4357243 (+) 681 WP_001282919.1 WYL domain-containing protein -
  EB670_RS21455 (EB670_21455) - 4357391..4358068 (+) 678 WP_001097301.1 hypothetical protein -
  EB670_RS21460 (EB670_21460) - 4358074..4358307 (+) 234 WP_001278287.1 DUF905 family protein -
  EB670_RS21465 (EB670_21465) - 4358397..4359215 (+) 819 WP_122927395.1 DUF932 domain-containing protein -
  EB670_RS21470 (EB670_21470) - 4359297..4359776 (+) 480 WP_000860074.1 antirestriction protein -
  EB670_RS21475 (EB670_21475) radC 4359792..4360268 (+) 477 WP_001366830.1 RadC family protein Machinery gene
  EB670_RS21480 (EB670_21480) - 4360331..4360552 (+) 222 WP_000692323.1 DUF987 domain-containing protein -
  EB670_RS21485 (EB670_21485) - 4360571..4361215 (+) 645 WP_045146861.1 hypothetical protein -
  EB670_RS21490 (EB670_21490) - 4361265..4361633 (+) 369 WP_063112944.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EB670_RS21495 (EB670_21495) - 4361723..4362100 (+) 378 WP_057109034.1 TA system toxin CbtA family protein -
  EB670_RS21500 (EB670_21500) - 4362097..4362246 (+) 150 Protein_4192 DUF5983 family protein -
  EB670_RS21505 (EB670_21505) - 4362322..4362519 (+) 198 WP_023563519.1 DUF957 domain-containing protein -
  EB670_RS21510 (EB670_21510) - 4362604..4363446 (+) 843 WP_122927396.1 DUF4942 domain-containing protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17729.34 Da        Isoelectric Point: 7.2519

>NTDB_id=283296 EB670_RS21475 WP_001366830.1 4359792..4360268(+) (radC) [Escherichia coli strain L73]
MQQISFLPGEMTTRERSLIQRALKALDRHLHEPGVAFTSTHAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALALVDIRVPDHLIVGGSQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=283296 EB670_RS21475 WP_001366830.1 4359792..4360268(+) (radC) [Escherichia coli strain L73]
ATGCAACAGATTTCCTTTCTGCCCGGAGAAATGACAACCAGAGAGCGCAGCCTCATTCAGCGGGCCCTGAAAGCCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACGCATGCGGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAGCTGATTGCCGGTGAAACCCTCTTCACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCGCA
CAATCACCCGTCCGGTGAAGTCACACCCAGCAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCGCTGGCCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAGCCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

59.615

65.823

0.392