Detailed information    

insolico Bioinformatically predicted

Overview

Name   comK   Type   Regulator
Locus tag   C7M28_RS17480 Genome accession   NZ_CP028215
Coordinates   3356149..3356727 (+) Length   192 a.a.
NCBI ID   WP_003245329.1    Uniprot ID   A0A809FND1
Organism   Bacillus subtilis strain SRCM102750     
Function   activate transcription of late competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 3351149..3361727
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS17460 (C7M28_03427) hemAT 3351660..3352958 (-) 1299 WP_003245216.1 heme-based aerotactic transducer HemAT -
  C7M28_RS17465 (C7M28_03428) comW 3353097..3354626 (-) 1530 WP_049140685.1 FAD-dependent oxidoreductase -
  C7M28_RS17470 (C7M28_03429) yhxC 3354738..3355595 (+) 858 WP_003245662.1 SDR family oxidoreductase -
  C7M28_RS17475 (C7M28_03430) yhzC 3355623..3355856 (-) 234 WP_003233142.1 IDEAL domain-containing protein -
  C7M28_RS17480 (C7M28_03431) comK 3356149..3356727 (+) 579 WP_003245329.1 competence transcription factor ComK Regulator
  C7M28_RS17485 (C7M28_03432) yhxD 3356774..3357673 (-) 900 WP_003245421.1 SDR family oxidoreductase -
  C7M28_RS17490 (C7M28_03433) yhjA 3357889..3358158 (+) 270 WP_003233136.1 excalibur calcium-binding domain-containing protein -
  C7M28_RS17495 (C7M28_03434) yhjB 3358201..3359670 (-) 1470 WP_046380906.1 sodium:solute symporter -
  C7M28_RS17500 (C7M28_03435) yhjC 3359667..3359867 (-) 201 WP_003224377.1 DUF3311 domain-containing protein -
  C7M28_RS17505 (C7M28_03436) - 3360066..3360437 (-) 372 WP_014476361.1 hypothetical protein -
  C7M28_RS17510 (C7M28_03437) yhjE 3360589..3361212 (+) 624 WP_046380907.1 TVP38/TMEM64 family protein -
  C7M28_RS17515 (C7M28_03438) lepB 3361214..3361720 (+) 507 WP_003233128.1 signal peptidase I -

Sequence

Protein


Download         Length: 192 a.a.        Molecular weight: 22429.68 Da        Isoelectric Point: 7.7153

>NTDB_id=283290 C7M28_RS17480 WP_003245329.1 3356149..3356727(+) (comK) [Bacillus subtilis strain SRCM102750]
MSQKTDAPLESYEVNGATIAVLPEEIDGKICSKIIEKDCVFYVNMKPLQIVDRSCRFFGSSYAGRKAGTYEVTKISHKPP
IMVDPSNQIFLFPTLSSTRPQCGWISHVHVKEFKATEFDDTEVTFSNGKTMELPISYNSFENQVYRTAWLRTKFQDRIDH
RVPKRQEFMLYPKEERTKMIYDFILRELGERY

Nucleotide


Download         Length: 579 bp        

>NTDB_id=283290 C7M28_RS17480 WP_003245329.1 3356149..3356727(+) (comK) [Bacillus subtilis strain SRCM102750]
ATGAGTCAGAAAACAGACGCACCTTTAGAATCGTATGAAGTGAACGGCGCAACAATTGCAGTGCTGCCAGAAGAAATAGA
CGGCAAAATCTGTTCCAAAATTATTGAAAAAGATTGCGTGTTTTATGTCAACATGAAGCCGCTGCAAATTGTCGACAGAA
GCTGCCGATTTTTTGGATCAAGCTATGCGGGAAGAAAAGCAGGAACTTATGAAGTGACAAAAATTTCACACAAGCCGCCG
ATCATGGTGGACCCTTCGAACCAAATCTTTTTATTCCCTACACTTTCTTCGACAAGACCCCAATGCGGCTGGATTTCCCA
TGTGCATGTAAAAGAATTCAAAGCGACTGAATTCGACGATACGGAAGTGACGTTTTCCAATGGGAAAACGATGGAGCTGC
CGATCTCTTATAATTCGTTCGAGAACCAGGTATACCGAACAGCGTGGCTCAGAACCAAATTCCAAGACAGAATCGACCAC
CGCGTGCCGAAAAGACAGGAATTTATGCTGTACCCGAAAGAAGAGCGGACGAAGATGATTTATGATTTTATTTTGCGTGA
GCTCGGGGAACGGTATTAG

Domains

Predicted by InterproScan.

ComK protein (ComK)

(10-158)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A809FND1

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comK Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment