Detailed information    

insolico Bioinformatically predicted

Overview

Name   nucA/comI   Type   Machinery gene
Locus tag   C7M28_RS13785 Genome accession   NZ_CP028215
Coordinates   2628282..2628731 (-) Length   149 a.a.
NCBI ID   WP_003234608.1    Uniprot ID   A0A8E0S750
Organism   Bacillus subtilis strain SRCM102750     
Function   cleavage of dsDNA into ssDNA (predicted from homology)   
DNA processing

Genomic Context

Location: 2623282..2633731
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS13750 (C7M28_02705) yckA 2623433..2624113 (-) 681 WP_024572176.1 amino acid ABC transporter permease -
  C7M28_RS13755 (C7M28_02706) yckB 2624123..2624986 (-) 864 WP_029727074.1 transporter substrate-binding domain-containing protein -
  C7M28_RS13760 - 2625147..2625344 (+) 198 WP_128992271.1 hypothetical protein -
  C7M28_RS13765 (C7M28_02709) yckC 2625364..2625819 (+) 456 WP_048654748.1 RDD family protein -
  C7M28_RS13770 (C7M28_02710) yckD 2625901..2626233 (+) 333 WP_015252849.1 YckD family protein -
  C7M28_RS13775 (C7M28_02711) bglC 2626387..2627820 (+) 1434 WP_048654749.1 6-phospho-beta-glucosidase -
  C7M28_RS13780 (C7M28_02712) nin/comJ 2627857..2628255 (-) 399 WP_015715226.1 DNA-entry nuclease inhibitor Regulator
  C7M28_RS13785 (C7M28_02713) nucA/comI 2628282..2628731 (-) 450 WP_003234608.1 DNA-entry nuclease Machinery gene
  C7M28_RS13790 (C7M28_02714) tlpC 2628899..2630620 (-) 1722 WP_061891260.1 methyl-accepting chemotaxis protein TlpC -
  C7M28_RS13795 (C7M28_02715) hxlB 2630731..2631288 (-) 558 WP_014478803.1 6-phospho-3-hexuloisomerase -
  C7M28_RS13800 (C7M28_02716) hxlA 2631294..2631926 (-) 633 WP_003234604.1 3-hexulose-6-phosphate synthase -
  C7M28_RS13805 (C7M28_02717) hxlR 2632155..2632517 (+) 363 WP_003246265.1 transcriptional activator HxlR -

Sequence

Protein


Download         Length: 149 a.a.        Molecular weight: 16470.42 Da        Isoelectric Point: 4.5282

>NTDB_id=283275 C7M28_RS13785 WP_003234608.1 2628282..2628731(-) (nucA/comI) [Bacillus subtilis strain SRCM102750]
MNITTDIIKTILLVIVIIAAAAVGLIKGDFFSTDQKTSQTKEYDETIAFPSDRYPETAKHIKDAINEGHSEVCTIDRDGA
EERREQSLKDVPSKKGYDRDEWPMAMCKEGGEGASVEYISPADNRGAGSWVGHQLTDYPDGTKVLFTIQ

Nucleotide


Download         Length: 450 bp        

>NTDB_id=283275 C7M28_RS13785 WP_003234608.1 2628282..2628731(-) (nucA/comI) [Bacillus subtilis strain SRCM102750]
GTGAACATCACGACGGACATCATAAAAACGATACTTCTCGTCATCGTCATCATAGCAGCTGCAGCTGTCGGTCTGATAAA
AGGAGACTTTTTTTCAACTGATCAAAAAACGTCTCAAACGAAAGAATATGATGAAACAATCGCCTTCCCATCTGACCGGT
ATCCCGAAACTGCCAAGCATATTAAGGATGCGATAAATGAGGGACACTCAGAGGTGTGCACTATTGACAGAGACGGAGCT
GAGGAACGCCGCGAGCAATCATTAAAGGACGTACCTTCCAAAAAGGGGTATGACAGAGATGAATGGCCAATGGCCATGTG
CAAAGAAGGCGGTGAGGGAGCTTCTGTAGAATACATTTCTCCCGCTGACAACCGCGGAGCAGGCTCTTGGGTCGGGCATC
AGCTTACCGATTACCCAGACGGCACAAAGGTTTTATTCACAATTCAGTAA

Domains

Predicted by InterproScan.

Deoxyribonuclease NucA/NucB (DNase_NucA_NucB)

(52-148)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  nucA/comI Bacillus subtilis subsp. subtilis str. 168

97.987

100

0.98

Multiple sequence alignment