Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EB670_RS09165 Genome accession   NZ_CP033378
Coordinates   1877966..1878442 (-) Length   158 a.a.
NCBI ID   WP_001186773.1    Uniprot ID   -
Organism   Escherichia coli strain L73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1872966..1883442
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB670_RS09115 (EB670_09115) sbmC 1873458..1873931 (+) 474 WP_001105389.1 DNA gyrase inhibitor SbmC -
  EB670_RS09120 (EB670_09120) yeeA 1874130..1875188 (+) 1059 WP_001200891.1 FUSC family protein -
  EB670_RS09125 (EB670_09125) tmaR 1875360..1875689 (+) 330 WP_000450409.1 DUF496 family protein -
  EB670_RS09130 (EB670_09130) - 1875790..1875972 (-) 183 WP_001016348.1 EutP/PduV family microcompartment system protein -
  EB670_RS09135 (EB670_09135) - 1876026..1876172 (+) 147 Protein_1783 transposase domain-containing protein -
  EB670_RS09140 (EB670_09140) - 1876461..1876541 (-) 81 Protein_1784 hypothetical protein -
  EB670_RS09145 (EB670_09145) yeeW 1876587..1876781 (-) 195 WP_000988599.1 DUF5983 family protein -
  EB670_RS09150 (EB670_09150) cbtA 1876778..1877151 (-) 374 Protein_1786 type IV toxin-antitoxin system cytoskeleton-binding toxin CbtA -
  EB670_RS09155 (EB670_09155) - 1877240..1877545 (-) 306 WP_044863316.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EB670_RS09160 (EB670_09160) yeeT 1877682..1877903 (-) 222 WP_000692323.1 DUF987 domain-containing protein -
  EB670_RS09165 (EB670_09165) radC 1877966..1878442 (-) 477 WP_001186773.1 RadC family protein Machinery gene
  EB670_RS09170 (EB670_09170) - 1878458..1878937 (-) 480 WP_000860076.1 antirestriction protein -
  EB670_RS09175 (EB670_09175) - 1879019..1879840 (-) 822 WP_001234530.1 DUF932 domain-containing protein -
  EB670_RS09185 (EB670_09185) - 1880061..1880471 (-) 411 WP_000846713.1 hypothetical protein -
  EB670_RS09190 (EB670_09190) - 1880487..1881170 (-) 684 WP_000775500.1 hypothetical protein -
  EB670_RS09195 (EB670_09195) - 1881306..1882376 (-) 1071 WP_000102643.1 patatin-like phospholipase family protein -
  EB670_RS09200 (EB670_09200) - 1882373..1883278 (-) 906 WP_000203535.1 diguanylate cyclase regulator RdcB family protein -

Sequence

Protein


Download         Length: 158 a.a.        Molecular weight: 17688.29 Da        Isoelectric Point: 7.2020

>NTDB_id=283267 EB670_RS09165 WP_001186773.1 1877966..1878442(-) (radC) [Escherichia coli strain L73]
MQQLSFLPGEMTPGERSLIQRALKTLDRHLHEPGVAFTSTRAAREWLILNMAGLEREEFRVLYLNNQNQLIAGETLFTGT
INRTEVHPREVIKRALYHNAAAVVLAHNHPSGEVTPSKADRLITERLVQALGLVDIRVPDHLIVGGNQVFSFAEHGLL

Nucleotide


Download         Length: 477 bp        

>NTDB_id=283267 EB670_RS09165 WP_001186773.1 1877966..1878442(-) (radC) [Escherichia coli strain L73]
ATGCAACAACTTTCCTTTCTGCCCGGAGAGATGACGCCCGGCGAGCGCAGCCTCATTCAACGGGCCCTGAAAACCCTGGA
CCGCCATCTTCATGAACCCGGCGTGGCCTTCACCTCCACCCGTGCAGCACGGGAATGGCTGATTCTGAACATGGCGGGAC
TGGAGCGTGAAGAATTCCGGGTGCTGTATCTGAATAACCAGAATCAACTGATTGCCGGTGAAACCCTCTTTACCGGCACC
ATCAACCGCACGGAAGTCCATCCCCGGGAAGTGATTAAACGCGCCCTGTACCACAATGCCGCTGCCGTGGTGCTGGCACA
CAATCACCCCTCCGGTGAAGTCACACCCAGTAAGGCAGACCGCCTTATCACGGAACGTCTGGTACAGGCACTGGGCCTGG
TGGATATCCGGGTGCCGGACCATCTGATAGTCGGTGGCAACCAGGTTTTCTCCTTTGCCGAACATGGTCTGCTTTAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(38-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

54.867

71.519

0.392

Multiple sequence alignment