Detailed information    

insolico Bioinformatically predicted

Overview

Name   comFC   Type   Machinery gene
Locus tag   C7M28_RS08665 Genome accession   NZ_CP028215
Coordinates   1655237..1655959 (-) Length   240 a.a.
NCBI ID   WP_003227991.1    Uniprot ID   A0AAE2SKX0
Organism   Bacillus subtilis strain SRCM102750     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1650237..1660959
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS08630 (C7M28_01702) fliW 1650376..1650807 (-) 432 WP_003228007.1 flagellar assembly protein FliW -
  C7M28_RS08635 (C7M28_01703) yviE 1650828..1651403 (-) 576 WP_003243053.1 DUF6470 family protein -
  C7M28_RS08640 (C7M28_01704) flgL 1651450..1652346 (-) 897 WP_003228004.1 flagellar hook-associated protein FlgL -
  C7M28_RS08645 (C7M28_01705) flgK 1652357..1653880 (-) 1524 WP_003228001.1 flagellar hook-associated protein FlgK -
  C7M28_RS08650 (C7M28_01706) flgN 1653899..1654381 (-) 483 WP_003227999.1 flagellar protein FlgN -
  C7M28_RS08655 (C7M28_01707) flgM 1654397..1654663 (-) 267 WP_003227997.1 flagellar biosynthesis anti-sigma factor FlgM -
  C7M28_RS08660 (C7M28_01708) yvyF 1654744..1655163 (-) 420 WP_003227995.1 TIGR03826 family flagellar region protein -
  C7M28_RS08665 (C7M28_01709) comFC 1655237..1655959 (-) 723 WP_003227991.1 comF operon protein ComFC Machinery gene
  C7M28_RS08670 (C7M28_01710) comFB 1655923..1656219 (-) 297 WP_003227989.1 late competence protein ComFB -
  C7M28_RS08675 (C7M28_01711) comFA 1656279..1657670 (-) 1392 WP_003243962.1 ATP-dependent helicase ComFA Machinery gene
  C7M28_RS08680 (C7M28_01712) fakBA 1657776..1658621 (-) 846 WP_003244125.1 DegV family protein -
  C7M28_RS08685 (C7M28_01713) degU 1658719..1659408 (-) 690 WP_003219701.1 two-component system response regulator DegU Regulator
  C7M28_RS08690 (C7M28_01714) degS 1659491..1660648 (-) 1158 WP_003227983.1 two-component sensor histidine kinase DegS Regulator

Sequence

Protein


Download         Length: 240 a.a.        Molecular weight: 27477.75 Da        Isoelectric Point: 9.0021

>NTDB_id=283256 C7M28_RS08665 WP_003227991.1 1655237..1655959(-) (comFC) [Bacillus subtilis strain SRCM102750]
MSNEAGGGIHKLICLLCDSQFSQDVTWRALFLLKPDEKVCYSCRSKLKKITGHICPLCGRPQSVHAVCRDCEVWRTRIRD
SLLLRQNRSVYTYNDMMKETLSRFKFRGDAEIINAFKSDFSSTFSKVYPDKHFVLVPIPLSKEREEERGFNQAHLLAECL
DRPSHHPLIRLNNEKQSKKKKTERLLSECIFDTKNNSAEGMNIILIDDLYTTGATLHFAARCLLEKGKAASVSSFTLIRS

Nucleotide


Download         Length: 723 bp        

>NTDB_id=283256 C7M28_RS08665 WP_003227991.1 1655237..1655959(-) (comFC) [Bacillus subtilis strain SRCM102750]
ATGTCAAACGAAGCAGGAGGAGGCATTCATAAACTGATCTGTTTATTATGTGATTCGCAATTTTCTCAAGATGTTACATG
GAGAGCCCTTTTTTTACTAAAGCCTGATGAAAAGGTTTGTTATTCTTGCAGAAGCAAATTAAAGAAAATCACAGGACATA
TCTGCCCCCTGTGCGGCAGACCTCAATCTGTTCATGCCGTATGCAGGGATTGCGAGGTGTGGAGAACAAGGATCAGAGAC
AGTTTGCTATTGCGTCAAAACCGTTCAGTTTACACATATAATGATATGATGAAAGAAACGCTCTCCCGTTTTAAATTTAG
AGGAGATGCAGAAATCATAAATGCATTTAAAAGTGATTTTTCTTCAACCTTTTCTAAGGTTTACCCCGATAAGCATTTTG
TTCTTGTACCTATTCCGCTGAGCAAGGAACGGGAAGAAGAGCGCGGATTTAACCAGGCACATCTCTTGGCAGAATGTTTA
GACCGGCCTTCCCACCATCCCCTCATTCGCCTGAATAATGAGAAACAGTCAAAGAAAAAGAAAACAGAACGCCTGCTGTC
AGAGTGCATTTTTGATACAAAAAATAATTCAGCAGAAGGTATGAATATCATTTTAATAGACGATCTTTATACAACAGGCG
CCACCTTGCACTTCGCAGCCCGCTGCTTATTAGAAAAAGGAAAAGCCGCTTCAGTGTCATCTTTTACCTTGATCAGAAGC
TAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(14-71)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comFC Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment