Detailed information    

insolico Bioinformatically predicted

Overview

Name   luxS   Type   Regulator
Locus tag   EB670_RS05515 Genome accession   NZ_CP033378
Coordinates   1121846..1122361 (+) Length   171 a.a.
NCBI ID   WP_001130211.1    Uniprot ID   A0ABR8T9Y4
Organism   Escherichia coli strain L73     
Function   induction of competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 1116846..1127361
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB670_RS05470 (EB670_05470) csrA 1117569..1117754 (+) 186 WP_000906486.1 carbon storage regulator CsrA -
  EB670_RS05500 (EB670_05500) yqaB 1119078..1119642 (+) 565 Protein_1073 fructose-1-phosphate/6-phosphogluconate phosphatase -
  EB670_RS05505 (EB670_05505) yqaA 1119639..1120067 (+) 429 WP_001287454.1 YqaA family protein -
  EB670_RS05510 (EB670_05510) gshA 1120140..1121696 (+) 1557 WP_000611804.1 glutamate--cysteine ligase -
  EB670_RS05515 (EB670_05515) luxS 1121846..1122361 (+) 516 WP_001130211.1 S-ribosylhomocysteine lyase Regulator
  EB670_RS05520 (EB670_05520) emrB 1122425..1123963 (-) 1539 WP_122927279.1 multidrug efflux MFS transporter permease subunit EmrB -
  EB670_RS05525 (EB670_05525) emrA 1123980..1125152 (-) 1173 WP_001295175.1 multidrug efflux MFS transporter periplasmic adaptor subunit EmrA -
  EB670_RS05530 (EB670_05530) emrR 1125279..1125809 (-) 531 WP_000378442.1 multidrug efflux transporter EmrAB transcriptional repressor EmrR -
  EB670_RS05535 (EB670_05535) ygaH 1125900..1126235 (-) 336 WP_000119766.1 L-valine transporter subunit YgaH -
  EB670_RS05540 (EB670_05540) ygaZ 1126225..1126962 (-) 738 WP_000445658.1 L-valine exporter subunit YgaZ -

Sequence

Protein


Download         Length: 171 a.a.        Molecular weight: 19416.19 Da        Isoelectric Point: 5.0362

>NTDB_id=283256 EB670_RS05515 WP_001130211.1 1121846..1122361(+) (luxS) [Escherichia coli strain L73]
MPLLDSFTVDHTRMEAPAVRVAKTMNTPHGDAITVFDLRFCVPNKEVMPERGIHTLEHLFAGFMRNHLNGNGVEIIDISP
MGCRTGFYMSLIGTPDEQRVADAWKAAMEDVLKVQDQNQIPELNVYQCGTYQMHSLQEAQDIARSILERDVRINSNEELA
LPKEKLQELHI

Nucleotide


Download         Length: 516 bp        

>NTDB_id=283256 EB670_RS05515 WP_001130211.1 1121846..1122361(+) (luxS) [Escherichia coli strain L73]
ATGCCGTTGTTAGATAGCTTCACAGTCGATCATACCCGGATGGAAGCGCCTGCAGTTCGGGTGGCGAAAACAATGAACAC
CCCGCATGGCGACGCAATCACCGTGTTCGATCTGCGCTTCTGCGTGCCGAACAAAGAAGTGATGCCAGAAAGAGGGATCC
ATACCCTGGAGCACCTGTTTGCTGGTTTTATGCGTAACCATCTTAACGGTAATGGTGTAGAGATTATCGATATCTCGCCA
ATGGGCTGCCGCACCGGTTTTTATATGAGTCTGATTGGTACGCCAGATGAGCAGCGTGTTGCTGATGCCTGGAAAGCGGC
AATGGAAGACGTGCTGAAAGTGCAGGATCAGAATCAGATCCCGGAACTGAACGTCTACCAGTGTGGCACTTACCAGATGC
ACTCGTTGCAGGAAGCGCAGGATATTGCGCGTAGCATTCTGGAACGTGACGTACGCATCAACAGCAACGAAGAACTGGCA
CTGCCGAAAGAGAAGTTGCAGGAACTGCACATCTAG

Domains

Predicted by InterProScan.

S-Ribosylhomocysteinase (LuxS) (LuxS)

(4-152)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  luxS Vibrio cholerae strain A1552

73.099

100

0.731

Multiple sequence alignment