Detailed information    

insolico Bioinformatically predicted

Overview

Name   radC   Type   Machinery gene
Locus tag   EB670_RS03530 Genome accession   NZ_CP033378
Coordinates   721478..721957 (+) Length   159 a.a.
NCBI ID   WP_122927270.1    Uniprot ID   -
Organism   Escherichia coli strain L73     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 716478..726957
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  EB670_RS03495 (EB670_03495) - 716973..717848 (+) 876 WP_122927264.1 GTPase family protein -
  EB670_RS03500 (EB670_03500) - 718062..718769 (+) 708 WP_122927265.1 transcriptional regulator -
  EB670_RS24840 - 718774..718920 (+) 147 WP_164708656.1 hypothetical protein -
  EB670_RS03505 (EB670_03505) - 718932..719147 (+) 216 WP_122927266.1 transposase -
  EB670_RS03510 (EB670_03510) - 719296..719706 (+) 411 WP_122927267.1 hypothetical protein -
  EB670_RS03515 (EB670_03515) - 719772..720713 (+) 942 WP_122927268.1 hypothetical protein -
  EB670_RS25445 - 720855..720983 (-) 129 WP_257619509.1 hypothetical protein -
  EB670_RS03525 (EB670_03525) - 721017..721466 (+) 450 WP_122927269.1 antirestriction protein -
  EB670_RS03530 (EB670_03530) radC 721478..721957 (+) 480 WP_122927270.1 DNA repair protein RadC Machinery gene
  EB670_RS03535 (EB670_03535) - 721978..722199 (+) 222 WP_122927271.1 DUF987 domain-containing protein -
  EB670_RS03540 (EB670_03540) - 722222..722581 (+) 360 WP_122927272.1 type IV toxin-antitoxin system YeeU family antitoxin -
  EB670_RS03545 (EB670_03545) - 722632..723012 (+) 381 WP_122927273.1 TA system toxin CbtA family protein -
  EB670_RS03550 (EB670_03550) - 723009..723500 (+) 492 WP_122927274.1 DUF5983 family protein -
  EB670_RS03555 (EB670_03555) - 723590..724435 (+) 846 WP_122927275.1 DUF4942 domain-containing protein -
  EB670_RS03565 (EB670_03565) mug 724738..725244 (+) 507 WP_000228937.1 G/U mismatch-specific DNA glycosylase -

Sequence

Protein


Download         Length: 159 a.a.        Molecular weight: 17532.11 Da        Isoelectric Point: 6.2895

>NTDB_id=283247 EB670_RS03530 WP_122927270.1 721478..721957(+) (radC) [Escherichia coli strain L73]
MDTQLPLFAAELPASAQRTIQEALTLLENQLREPGAAFTSTVAVRDWLRLHMAGLEREIFKVLYLDNQHRLLASETLFTG
TISSTEVHPREIVRAAMKHNAAAIIAAHNHPSGEAEPSQADKHITQRIVGALALVDVRLLDHLVIGGMDIVSFAERGWL

Nucleotide


Download         Length: 480 bp        

>NTDB_id=283247 EB670_RS03530 WP_122927270.1 721478..721957(+) (radC) [Escherichia coli strain L73]
ATGGATACACAGCTCCCGCTGTTTGCTGCTGAATTACCCGCATCGGCACAGCGCACCATCCAGGAAGCCTTAACCCTGCT
GGAAAATCAGCTCCGTGAACCCGGAGCAGCCTTTACCTCAACCGTCGCTGTGCGCGACTGGCTGCGTCTGCATATGGCCG
GACTGGAGCGGGAAATCTTTAAGGTCCTGTATCTGGATAACCAGCACCGCCTGCTCGCCAGTGAAACCCTGTTTACCGGG
ACTATCAGCAGTACCGAAGTCCATCCCCGTGAAATAGTCCGGGCGGCAATGAAACACAATGCCGCCGCCATTATCGCCGC
CCATAACCATCCTTCCGGGGAGGCTGAGCCCAGTCAGGCAGACAAACATATCACGCAGCGTATCGTCGGGGCACTCGCCT
TGGTGGACGTTCGCCTGCTGGACCACCTCGTTATCGGCGGGATGGATATCGTCTCCTTTGCCGAGCGCGGCTGGTTATAA

Domains

Predicted by InterProScan.

RadC-like JAB domain (RadC)

(39-157)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  radC Haemophilus influenzae Rd KW20

55.769

65.409

0.365