Detailed information    

insolico Bioinformatically predicted

Overview

Name   recU   Type   Machinery gene
Locus tag   C7M28_RS02015 Genome accession   NZ_CP028215
Coordinates   390330..390950 (+) Length   206 a.a.
NCBI ID   WP_004399067.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102750     
Function   plasmid transformation; homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 385330..395950
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M28_RS01975 (C7M28_00390) ptsA 386461..386967 (-) 507 WP_038428153.1 PTS glucose transporter subunit IIA -
  C7M28_RS01980 (C7M28_00391) ypqA 387105..387524 (+) 420 WP_014477158.1 Hsp20/alpha crystallin family protein -
  C7M28_RS01985 (C7M28_00392) sppG 387545..387922 (-) 378 WP_046381139.1 YppG family protein -
  C7M28_RS01990 (C7M28_00393) yppF 388110..388298 (+) 189 WP_003230690.1 YppF family protein -
  C7M28_RS01995 (C7M28_00394) yppE 388337..388708 (-) 372 WP_003246080.1 YppE family protein -
  C7M28_RS02000 (C7M28_00395) yppD 388754..388999 (-) 246 WP_004398488.1 YppD family protein -
  C7M28_RS02005 (C7M28_00396) sspM 389198..389302 (+) 105 WP_003225606.1 acid-soluble spore protein SspM -
  C7M28_RS02010 (C7M28_00397) yppC 389327..390289 (-) 963 WP_046381140.1 DUF2515 domain-containing protein -
  C7M28_RS02015 (C7M28_00398) recU 390330..390950 (+) 621 WP_004399067.1 Holliday junction resolvase RecU Machinery gene
  C7M28_RS02020 (C7M28_00399) ponA 390972..393704 (+) 2733 WP_046381141.1 PBP1A family penicillin-binding protein -
  C7M28_RS02025 (C7M28_00400) ypoC 393780..394274 (-) 495 WP_029726783.1 YpoC family protein -
  C7M28_RS02030 (C7M28_00401) nth 394271..394930 (-) 660 WP_009967580.1 endonuclease III -
  C7M28_RS02035 (C7M28_00402) dnaD 394949..395647 (-) 699 WP_029726781.1 DNA replication protein DnaD -

Sequence

Protein


Download         Length: 206 a.a.        Molecular weight: 23959.09 Da        Isoelectric Point: 9.6240

>NTDB_id=283226 C7M28_RS02015 WP_004399067.1 390330..390950(+) (recU) [Bacillus subtilis strain SRCM102750]
MIRYPNGKTFQPKHSVSSQNSQKRAPSYSNRGMTLEDDLNETNKYYLTNQIAVIHKKPTPVQIVNVHYPKRSAAVIKEAY
FKQSSTTDYNGIYKGRYIDFEAKETKNKTSFPLQNFHDHQIEHMKQVKAQDGICFVIISAFDQVYFLEADKLFYFWDRKE
KNGRKSIRKDELEETAYPISLGYAPRIDYISIIEQLYFSPSSGAKG

Nucleotide


Download         Length: 621 bp        

>NTDB_id=283226 C7M28_RS02015 WP_004399067.1 390330..390950(+) (recU) [Bacillus subtilis strain SRCM102750]
GTGATTCGGTATCCTAATGGAAAAACATTTCAGCCGAAACATTCGGTTTCATCCCAAAACAGTCAGAAAAGGGCCCCGTC
TTACAGTAATCGCGGAATGACCCTCGAAGATGACTTAAACGAAACGAATAAGTATTATCTGACAAACCAAATTGCCGTTA
TACACAAAAAGCCGACACCTGTTCAAATTGTAAATGTCCATTATCCAAAAAGAAGTGCCGCAGTGATTAAAGAAGCTTAC
TTTAAACAATCATCGACAACAGACTACAATGGGATTTACAAAGGGCGGTATATTGATTTTGAGGCGAAAGAAACGAAAAA
CAAGACCTCTTTCCCCCTGCAGAATTTTCATGACCATCAAATCGAGCATATGAAGCAGGTAAAGGCTCAAGACGGTATTT
GTTTTGTTATTATATCCGCTTTCGACCAGGTTTATTTTTTGGAAGCCGATAAGCTGTTTTATTTCTGGGACAGAAAAGAA
AAAAACGGCAGAAAATCAATTCGAAAAGATGAGTTGGAAGAAACAGCTTATCCGATTTCTCTTGGATACGCACCCAGAAT
TGATTATATTAGTATTATTGAACAGCTTTATTTTTCGCCATCATCTGGTGCGAAAGGTTGA

Domains

Predicted by InterproScan.

Recombination protein U (RecU)

(31-193)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recU Bacillus subtilis subsp. subtilis str. 168

100

100

1

Multiple sequence alignment