Detailed information    

insolico Bioinformatically predicted

Overview

Name   recF   Type   Machinery gene
Locus tag   C7M27_RS19150 Genome accession   NZ_CP028213
Coordinates   3684424..3685536 (-) Length   370 a.a.
NCBI ID   WP_128739960.1    Uniprot ID   -
Organism   Bacillus subtilis strain SRCM102749     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3679424..3690536
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  C7M27_RS19135 (C7M27_03782) gyrA 3679513..3681978 (-) 2466 WP_003244540.1 DNA topoisomerase (ATP-hydrolyzing) subunit A -
  C7M27_RS19140 (C7M27_03783) gyrB 3682190..3684106 (-) 1917 WP_003226808.1 DNA topoisomerase (ATP-hydrolyzing) subunit B -
  C7M27_RS19145 (C7M27_03784) remB 3684161..3684406 (-) 246 WP_032724947.1 extracellular matrix regulator RemB -
  C7M27_RS19150 (C7M27_03785) recF 3684424..3685536 (-) 1113 WP_128739960.1 DNA replication/repair protein RecF Machinery gene
  C7M27_RS19155 (C7M27_03786) rlbA 3685552..3685767 (-) 216 WP_003226810.1 ribosome maturation protein RlbA -
  C7M27_RS19160 (C7M27_03787) dnaN 3685898..3687034 (-) 1137 WP_003226811.1 DNA polymerase III subunit beta -
  C7M27_RS19165 (C7M27_03788) dnaA 3687224..3688564 (-) 1341 WP_003242674.1 chromosomal replication initiator protein DnaA -
  C7M27_RS19170 rpmH 3689191..3689325 (+) 135 WP_003178075.1 50S ribosomal protein L34 -
  C7M27_RS19175 (C7M27_03789) rnpA 3689477..3689827 (+) 351 WP_021481107.1 ribonuclease P protein component -

Sequence

Protein


Download         Length: 370 a.a.        Molecular weight: 42353.41 Da        Isoelectric Point: 7.3656

>NTDB_id=283216 C7M27_RS19150 WP_128739960.1 3684424..3685536(-) (recF) [Bacillus subtilis strain SRCM102749]
MYIQNLELTSYRNYDHAELQFENKVNVIIGENAQGKTNLMEAIYVLSMAKSHRTSNDKELIRWDKDYAKIEGRVMKQNGA
IPMQLVISKKGKKGKVNHIEQQKLSQYVGALNTIMFAPEDLNLVKGSPQVRRRFLDMEIGQVSPVYLYDLSLYQKILSQR
NHFLKQLQTRKQTDRTMLDVLTDQLVEVAAKVVVKRLQFTAQLEKWAQPIHAGISRGLEELTLKYHTALDVSDPLELSKI
GDSYQEAFSKLREKEIERGVTLSGPHRDDVLFYVNGRDVQTYGSQGQQRTTALSLKLAEIDLIHEEIGEYPILLLDDVLS
ELDDYRQSHLLHTIQGRVQTFVTTTSVDGIDHETLRHAGMFRVQNGALVK

Nucleotide


Download         Length: 1113 bp        

>NTDB_id=283216 C7M27_RS19150 WP_128739960.1 3684424..3685536(-) (recF) [Bacillus subtilis strain SRCM102749]
TTGTATATCCAGAACTTAGAACTGACATCTTACCGCAACTACGACCATGCTGAACTTCAATTTGAAAATAAAGTAAATGT
GATCATCGGAGAAAACGCCCAGGGGAAGACAAACCTCATGGAGGCGATCTATGTCTTGTCCATGGCGAAATCGCACCGGA
CATCAAATGACAAAGAACTTATACGGTGGGACAAAGACTATGCTAAAATAGAGGGAAGAGTGATGAAGCAAAACGGGGCA
ATCCCGATGCAGCTCGTCATCTCCAAAAAGGGTAAAAAGGGCAAGGTCAATCATATTGAACAGCAAAAGCTCAGCCAGTA
TGTCGGGGCCCTCAACACCATTATGTTCGCGCCGGAAGATTTAAATCTTGTAAAAGGAAGCCCTCAAGTGAGAAGGCGGT
TTCTTGACATGGAAATCGGACAGGTTTCTCCCGTCTATCTTTATGATCTTTCTCTTTACCAGAAAATCCTTTCCCAGCGG
AATCATTTTTTGAAACAGCTGCAAACAAGAAAACAAACTGACCGGACGATGCTCGATGTTCTGACCGATCAGCTTGTAGA
AGTTGCAGCAAAAGTCGTCGTAAAACGCCTGCAGTTTACAGCACAGCTCGAGAAATGGGCGCAGCCCATCCATGCAGGCA
TCTCAAGAGGGCTTGAAGAACTGACCCTGAAATACCATACAGCTCTTGATGTATCAGATCCCCTAGAGTTGTCGAAAATA
GGAGATAGCTATCAAGAAGCGTTTTCTAAATTAAGAGAAAAAGAAATTGAGCGTGGTGTGACGCTGTCAGGGCCTCATCG
CGATGATGTTCTTTTCTATGTGAACGGACGCGATGTGCAGACGTATGGTTCACAAGGACAGCAGCGAACAACGGCGTTGT
CCCTTAAGCTGGCGGAGATTGACCTGATCCATGAAGAAATCGGAGAATATCCCATTTTACTATTGGATGATGTACTGAGT
GAACTGGATGATTATCGCCAGTCACACTTGCTTCATACGATCCAAGGCCGTGTACAAACGTTTGTCACAACGACAAGCGT
TGATGGCATTGATCACGAAACCTTACGTCATGCAGGAATGTTCCGTGTGCAAAATGGTGCGTTAGTGAAGTGA

Domains

Predicted by InterproScan.

RecF/RecN/SMC N terminal domain (SMC_N)

(2-349)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recF Bacillus subtilis subsp. subtilis str. 168

99.189

100

0.992

Multiple sequence alignment